BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0224000 Os12g0224000|AK060284
(212 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G63770.1 | chr5:25519293-25522404 FORWARD LENGTH=713 327 4e-90
AT5G07920.1 | chr5:2525197-2528396 REVERSE LENGTH=729 278 1e-75
AT2G20900.1 | chr2:8989412-8992798 REVERSE LENGTH=510 91 5e-19
AT4G28130.1 | chr4:13971552-13974323 FORWARD LENGTH=467 88 3e-18
AT5G57690.1 | chr5:23372063-23374469 REVERSE LENGTH=488 80 1e-15
AT4G30340.1 | chr4:14838465-14840941 REVERSE LENGTH=493 71 3e-13
AT2G18730.1 | chr2:8118976-8121689 FORWARD LENGTH=489 70 6e-13
>AT5G63770.1 | chr5:25519293-25522404 FORWARD LENGTH=713
Length = 712
Score = 327 bits (837), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 150/211 (71%), Positives = 180/211 (85%)
Query: 2 DVDHAAVTVLDRWNVAIKEKNGAEDQCTKQVKFMTNYIGVGCDAKVAYDFHTTREEKPDK 61
D+DHAAVT+LDRW+V I E++ + + KFM NY+G+GCDAKVAY+FH R+EKP+K
Sbjct: 459 DIDHAAVTMLDRWSVKIVEESTEKFPAREGHKFMMNYLGIGCDAKVAYEFHMMRQEKPEK 518
Query: 62 FCSQFVNKLIYAREGAKDIMDRSCSDLPWHVSLEVDGKNVEIPEDAEGVIVLNIPSYMGG 121
FCSQFVNKL YA+EGA+DIMDR+C+DLPW V LEVDGK++EIP+D+EG+IVLNI SYMGG
Sbjct: 519 FCSQFVNKLRYAKEGARDIMDRACADLPWQVWLEVDGKDIEIPKDSEGLIVLNIGSYMGG 578
Query: 122 VDLWQNDNEHDDDFGLQSMHDKMLEVVCISGTWHLGKLQVGLSRAHRLAQGKVIRLHLHS 181
VDLWQND EHDD+F +Q MHDK LEVVC+ G WHLGKLQVGLS+A RLAQGKVIR+H+ S
Sbjct: 579 VDLWQNDYEHDDNFSIQCMHDKTLEVVCVRGAWHLGKLQVGLSQARRLAQGKVIRIHVSS 638
Query: 182 SFPVQVDGEPWIQPPGCLEISHRGQVLYLSR 212
FPVQ+DGEP+IQ PGCLEI+H GQV L R
Sbjct: 639 PFPVQIDGEPFIQQPGCLEITHHGQVFMLRR 669
>AT5G07920.1 | chr5:2525197-2528396 REVERSE LENGTH=729
Length = 728
Score = 278 bits (712), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 130/211 (61%), Positives = 162/211 (76%), Gaps = 3/211 (1%)
Query: 2 DVDHAAVTVLDRWNVAIKEKNGAEDQCTKQVKFMTNYIGVGCDAKVAYDFHTTREEKPDK 61
+++HAAVTVLDRW V+I + G + Q K+M NYIGVGCDAKVA + H REE P++
Sbjct: 478 NIEHAAVTVLDRWKVSILNQQGKQLQ---PPKYMNNYIGVGCDAKVALEIHNLREENPER 534
Query: 62 FCSQFVNKLIYAREGAKDIMDRSCSDLPWHVSLEVDGKNVEIPEDAEGVIVLNIPSYMGG 121
F SQF+NK++YAREGA+ IMDR+ D PW V +EVDG ++E+PEDAEG++V NI SYMGG
Sbjct: 535 FYSQFMNKVLYAREGARSIMDRTFEDFPWQVRVEVDGVDIEVPEDAEGILVANIGSYMGG 594
Query: 122 VDLWQNDNEHDDDFGLQSMHDKMLEVVCISGTWHLGKLQVGLSRAHRLAQGKVIRLHLHS 181
VDLWQN++E ++F QSMHDK++EVV ISGTWHLGKLQVGLSRA RLAQG +++ L +
Sbjct: 595 VDLWQNEDETYENFDPQSMHDKIVEVVSISGTWHLGKLQVGLSRARRLAQGSAVKIQLCA 654
Query: 182 SFPVQVDGEPWIQPPGCLEISHRGQVLYLSR 212
PVQ+DGEPW Q P L ISH GQ L R
Sbjct: 655 PLPVQIDGEPWNQQPCTLTISHHGQAFMLKR 685
>AT2G20900.1 | chr2:8989412-8992798 REVERSE LENGTH=510
Length = 509
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 93/199 (46%), Gaps = 24/199 (12%)
Query: 37 NYIGVGCDAKVAYDFHTTREEKPDKFCSQFVNKLIYAREGAK------DIMDRSCSDLPW 90
NY +G DA+++Y FH+ R+ P+KF +Q VN+ Y + G + + ++
Sbjct: 234 NYFSLGMDAQISYAFHSERKLHPEKFKNQLVNQSTYVKLGCTQGWFCASLFHPASRNIAQ 293
Query: 91 HVSLEVDGKN-----VEIPEDAEGVIVLNIPSYMGGVDLWQNDNEHDD-DFGLQS--MHD 142
+++ +N + IP ++ LN+PS+ GG++ W N D GL + D
Sbjct: 294 LAKVKIATRNGQWQDLHIPHSIRSIVCLNLPSFSGGLNPWGTPNPRKQRDRGLTPPFVDD 353
Query: 143 KMLEVVCISGTWHLGKLQVGLSRAHRLAQGKVIRLHLHSSFP----VQVDGEPWIQPPGC 198
++EVV WH L RLAQ IR H +++DGEPW QP
Sbjct: 354 GLIEVVGFRNAWHGLVLLAPNGHGTRLAQANRIRFEFHKGATDHTFMRMDGEPWKQPLPL 413
Query: 199 ------LEISHRGQVLYLS 211
+EISH GQV L+
Sbjct: 414 DDETVMVEISHLGQVNMLA 432
>AT4G28130.1 | chr4:13971552-13974323 FORWARD LENGTH=467
Length = 466
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 93/199 (46%), Gaps = 24/199 (12%)
Query: 37 NYIGVGCDAKVAYDFHTTREEKPDKFCSQFVNKLIYAREGAK------DIMDRSCSDLPW 90
NY +G DA+V+Y FH+ R+ P++F +Q VN+ Y + + S ++
Sbjct: 235 NYFSLGMDAQVSYAFHSQRKLHPERFKNQLVNQSTYLKLSCTQGWFFASLFHPSSQNIAK 294
Query: 91 HVSLEVDGKN-----VEIPEDAEGVIVLNIPSYMGGVDLWQNDN---EHDDDFGLQSMHD 142
+++ +N + IP+ ++ LN+PS+ GG++ W N + D + D
Sbjct: 295 LAKIQICDRNGQWNDLHIPQSIRSIVCLNLPSFSGGLNPWGTPNPKKQRDRSLTAPFVDD 354
Query: 143 KMLEVVCISGTWHLGKLQVGLSRAHRLAQGKVIRLHLHSSFP----VQVDGEPWIQP-PG 197
++E+V WH L RLAQ +RL +++DGEPW QP P
Sbjct: 355 GLIEIVGFRNAWHGLILLSPNGHGTRLAQANRVRLEFKKGAAKHAYMRIDGEPWKQPLPS 414
Query: 198 -----CLEISHRGQVLYLS 211
+EISH GQV L+
Sbjct: 415 NDETVMVEISHHGQVNMLA 433
>AT5G57690.1 | chr5:23372063-23374469 REVERSE LENGTH=488
Length = 487
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 80/180 (44%), Gaps = 22/180 (12%)
Query: 37 NYIGVGCDAKVAYDFHTTREEKPDKFCSQFVNKLIYAREGAKD-------IMDRSCSDLP 89
NY +G DA+VAY FH R EKP NK+IY+ G I D L
Sbjct: 285 NYFSIGMDAQVAYGFHHLRNEKPYLANGPIANKIIYSGYGCSQGWFLTHCINDPGLRGLK 344
Query: 90 WHVSLEV------DGKNVEIPEDAEGVIVLNIPSYMGGVDLWQN---DNEHDDDFGLQSM 140
++L + + + V +P+ V+ LN+ SY G + W N D F
Sbjct: 345 NIMTLHIKKLDSSEWEKVPVPKSVRAVVALNLHSYGSGRNPWGNLKQDYLEKRGFVEAQA 404
Query: 141 HDKMLEVVCISGTWHLGKLQVGLSRAHRLAQGKVIRLHLHS-----SFPVQVDGEPWIQP 195
D +LE+ + WH + V L A +AQ IRL + +F +Q+DGEPW QP
Sbjct: 405 DDGLLEIFGLKQGWHASFVMVELISAKHIAQAAAIRLEIRGGDWKDAF-MQMDGEPWKQP 463
>AT4G30340.1 | chr4:14838465-14840941 REVERSE LENGTH=493
Length = 492
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 83/190 (43%), Gaps = 42/190 (22%)
Query: 37 NYIGVGCDAKVAYDFHTTREEKPDKFCSQFVNKLIY------------------AREGAK 78
NY +G DA+VAY FH R EKP NK+IY A G +
Sbjct: 290 NYFSIGMDAQVAYGFHHLRNEKPYLAQGPVTNKIIYSSYSCTQGWFCTPCVNNPALRGLR 349
Query: 79 DIM-----DRSCSDLPWHVSLEVDGKNVEIPEDAEGVIVLNIPSYMGGVDLWQN-DNEHD 132
+IM +CS+ W + + +P+ ++VLN+ +Y G W N ++
Sbjct: 350 NIMKIHIKKANCSE--W--------EEIHVPKSVRSIVVLNLYNYGSGRHPWGNLRPKYL 399
Query: 133 DDFGLQSMH--DKMLEVVCISGTWHLGKLQVGLSRAHRLAQGKVIRLHLH-----SSFPV 185
+ G H D ++E+ + WH + + A +AQ IR L ++F +
Sbjct: 400 EKRGFVEAHCDDGLIEIFGLKQGWHASFVMAEIISAKHIAQAAAIRFELRGGDWKNAF-L 458
Query: 186 QVDGEPWIQP 195
Q+DGEPW QP
Sbjct: 459 QMDGEPWKQP 468
>AT2G18730.1 | chr2:8118976-8121689 FORWARD LENGTH=489
Length = 488
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 22/180 (12%)
Query: 37 NYIGVGCDAKVAYDFHTTREEKPDKFCSQFVNKLIYAREGAKD-------IMDRSCSDLP 89
NY+ +G DA+VAY FH R KP NK+IY+ G + D L
Sbjct: 286 NYLSIGMDAQVAYGFHHLRNTKPYLAQGPISNKIIYSSFGCSQGWFCTPCVNDPGLRGLR 345
Query: 90 WHVSLEVDGKN------VEIPEDAEGVIVLNIPSYMGGVDLWQN-DNEHDDDFGLQSMH- 141
+ + + N + +P++ ++ LN+ SY G W N ++ + G H
Sbjct: 346 NIMKIHIKKVNCSQWEEIAVPKNVRSIVALNLHSYGSGSHPWGNLKPDYLEKRGFVEAHC 405
Query: 142 -DKMLEVVCISGTWHLGKLQVGLSRAHRLAQGKVIRLHLHS-----SFPVQVDGEPWIQP 195
D ++E+ WH + L A +AQ +R L +F +Q+DGEPW QP
Sbjct: 406 DDGLIEIFGFKQGWHASFVMAELISAKHIAQAAAVRFELRGGDWRDAF-LQMDGEPWKQP 464
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,142,193
Number of extensions: 223769
Number of successful extensions: 502
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 487
Number of HSP's successfully gapped: 7
Length of query: 212
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 118
Effective length of database: 8,529,465
Effective search space: 1006476870
Effective search space used: 1006476870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)