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Os12g0189300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Isocitrate lyase and phosphorylmutase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0906) R2 : 0.903
β1 : -4.61 (0.29) R2dD : 0.0773 R2D : -0.00119
β2 : 10.8 (0.174) R2dC : 0.826 R2C : 0.832
β3 : 13.6 (1.72) R2dE : 0.273 R2E : -0.226
β4 : 5.77 (0.776) R2dD*C : 0.012 R2D*C : 0.00193
β5 : 32.7 (4.97) R2dD*E : 0.186 R2D*E : -0.207
γ1 : -1.08 (0.146) R2dN8 : 0.016 R2N8 : -0.0279
σ : 1.27
deviance : 726
__
_____
C
peak time of C : 7.27
E
wheather : radiation
threshold : 1.127
memory length : 1444
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10.6
open length of G : 3.88

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
726 1.27 11.4 -4.61 10.8 13.6 5.77 32.7 -1.08 7.27 1.127 1444 10.6 3.88
795.28 1.32 11.7 -3.17 10.7 1.03 6.29 -- -0.924 7.21 0.01437 1476 10.5 4.43
815.91 1.33 11.4 -4.61 10.8 13.6 -- 33.5 -1.08 7.27 1.127 1444 10.6 3.88
865.89 1.37 11.7 -3.45 10.9 2.91 -- -- -0.938 7.21 0.5619 1496 10.6 4.7
6392.11 3.74 11.9 -2.87 -- 3.22 -- 1.8 -0.495 -- 1.029 1453 9.7 4.12
839.53 1.36 11.7 -3.19 10.9 -- 6.15 -- -1.01 7.48 -- -- -- --
944.06 1.44 11.7 -3.05 10.9 -- -- -- -1.02 7.47 -- -- -- --
1353.14 1.71 12.1 -2.36 -- 7.99 -- -- -0.95 -- -1.92e-06 2132 0.0166 3.87
1148.18 1.59 11.7 -- 10.8 0.992 -- -- -0.68 7.21 0.5619 1496 10.6 4.7
7274.13 3.99 12 -2.88 -- -- -- -- -0.845 -- -- -- -- --
1188.65 1.61 11.7 -- 10.9 -- -- -- -0.678 7.49 -- -- -- --
1559.78 1.84 11.9 -- -- 8.21 -- -- -0.627 -- -0.7353 2107 0.00786 4.3
7492.68 4.04 11.9 -- -- -- -- -- -0.525 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 749.01 radiation 1.0 1440 > th dose independent rect. 11 2
2 749.23 radiation 1.0 720 < th dose independent rect. 14 1
3 749.23 radiation 1.0 720 < th dose dependent rect. 14 1
5 751.56 radiation 1.0 1440 > th dose independent rect. 11 4
6 752.02 temperature 20.0 270 > th dose independent rect. 13 11
12 756.24 radiation 1.0 1440 > th dose independent rect. 9 6
15 758.29 wind 1.0 90 < th dose dependent rect. 23 2
19 760.30 wind 1.0 90 < th dose independent rect. 23 2
21 761.05 radiation 1.0 1440 < th dose independent rect. 9 6
22 761.05 radiation 1.0 1440 < th dose dependent rect. 9 6
23 762.01 radiation 1.0 1440 < th dose independent rect. 9 4
24 762.01 radiation 1.0 1440 < th dose dependent rect. 9 4
34 763.41 radiation 10.0 1440 < th dose independent rect. 24 5
39 763.51 radiation 10.0 1440 < th dose dependent rect. 24 5
53 765.18 radiation 10.0 1440 < th dose independent rect. 20 9
62 765.75 wind 1.0 90 < th dose independent rect. 14 12
71 766.67 radiation 10.0 1440 < th dose dependent rect. 20 9
76 767.07 radiation 10.0 1440 < th dose independent rect. 2 3
81 767.65 wind 1.0 90 < th dose independent rect. 17 9
83 767.74 radiation 10.0 1440 < th dose dependent rect. 2 3
88 767.87 wind 1.0 90 < th dose dependent rect. 21 5
92 768.10 wind 1.0 90 < th dose dependent rect. 14 12
108 769.16 temperature 30.0 270 < th dose dependent rect. 21 6
109 769.59 wind 1.0 90 < th dose dependent rect. 17 9
118 770.12 temperature 30.0 90 < th dose dependent rect. 21 8
122 770.52 temperature 30.0 90 < th dose dependent rect. 19 10
125 770.58 wind 7.0 270 < th dose independent rect. 11 23
128 770.91 humidity 60.0 14400 > th dose independent rect. 20 10
143 771.78 temperature 15.0 270 > th dose independent rect. 7 22
148 771.94 temperature 15.0 270 > th dose independent rect. 8 20
150 772.19 temperature 30.0 90 < th dose dependent rect. 23 6
151 772.23 temperature 20.0 270 < th dose dependent rect. 10 16
153 772.38 temperature 15.0 270 > th dose independent rect. 9 18
162 772.89 temperature 15.0 1440 > th dose independent rect. 6 5
165 772.97 wind 1.0 720 < th dose independent rect. 23 1
171 773.38 temperature 20.0 90 > th dose independent rect. 21 13
183 774.23 wind 7.0 720 < th dose independent rect. 5 10
185 774.49 temperature 20.0 10 > th dose independent rect. 22 12
187 774.61 temperature 25.0 10 < th dose dependent rect. 22 7
194 774.79 temperature 30.0 270 < th dose dependent rect. 5 2
198 774.98 temperature 20.0 90 > th dose independent rect. 14 20
211 775.36 temperature 20.0 270 < th dose dependent rect. 16 10
221 775.67 humidity 60.0 14400 > th dose independent rect. 24 8
234 776.05 temperature 20.0 270 < th dose independent rect. 21 4
245 776.30 wind 7.0 270 < th dose independent rect. 12 11
246 776.30 wind 1.0 90 < th dose independent rect. 7 19
248 776.36 radiation 1.0 1440 > th dose independent rect. 9 1
253 776.55 temperature 30.0 270 < th dose dependent rect. 4 4
259 776.82 wind 1.0 43200 < th dose independent rect. 5 6
296 777.99 humidity 60.0 14400 > th dose independent rect. 2 6
308 778.28 temperature 20.0 270 < th dose dependent sin 18 NA
310 778.30 temperature 20.0 270 < th dose independent rect. 17 9
320 778.47 temperature 15.0 1440 > th dose independent rect. 8 3
326 778.54 wind 1.0 43200 > th dose independent rect. 6 2
329 778.61 atmosphere 1015.0 270 < th dose independent rect. 13 10
336 778.75 wind 1.0 43200 < th dose independent rect. 6 1
345 779.01 precipitation 0.1 90 < th dose independent rect. 10 19
346 779.01 precipitation 0.1 90 < th dose dependent rect. 10 19
355 779.17 radiation 30.0 270 < th dose independent rect. 4 4
357 779.22 wind 7.0 270 < th dose independent rect. 4 13
358 779.23 wind 9.0 270 < th dose dependent rect. 4 4
361 779.28 wind 9.0 270 < th dose independent rect. 4 4
362 779.28 temperature 10.0 270 > th dose independent rect. 4 4
364 779.28 temperature 30.0 270 < th dose independent rect. 4 4
365 779.28 humidity 50.0 270 > th dose independent rect. 4 4
367 779.28 atmosphere 995.0 270 > th dose independent rect. 4 4
368 779.28 atmosphere 1015.0 270 < th dose independent rect. 4 4
374 779.45 wind 7.0 30 < th dose independent rect. 14 20
376 779.51 temperature 20.0 270 < th dose independent rect. 10 16
377 779.55 wind 1.0 270 > th dose independent rect. 12 11
389 779.84 wind 1.0 43200 > th dose independent rect. 5 5
393 779.91 wind 1.0 43200 < th dose independent rect. 6 3
396 779.96 precipitation 0.1 270 < th dose independent rect. 4 4
397 779.96 precipitation 0.1 270 < th dose dependent rect. 4 4
405 779.98 wind 1.0 90 < th dose independent rect. 9 17
427 780.61 wind 1.0 720 < th dose dependent rect. 23 1
440 780.78 atmosphere 995.0 1440 > th dose independent rect. 6 5
441 780.78 temperature 10.0 1440 > th dose independent rect. 11 19
444 780.79 humidity 50.0 270 > th dose dependent rect. 5 2
447 780.85 radiation 30.0 270 < th dose dependent rect. 5 2
451 780.92 wind 1.0 10 > th dose independent rect. 5 5
464 781.12 radiation 1.0 1440 > th dose independent rect. 4 1
474 781.12 radiation 1.0 1440 > th dose dependent rect. 4 1
485 781.14 temperature 25.0 270 < th dose independent rect. 5 2
486 781.14 radiation 40.0 270 < th dose independent rect. 3 6
495 781.39 atmosphere 995.0 43200 < th dose independent rect. 10 22
506 781.54 wind 9.0 270 < th dose dependent rect. 5 2
509 781.57 atmosphere 995.0 43200 > th dose independent rect. 9 23
518 781.62 atmosphere 995.0 43200 > th dose independent rect. 9 21
520 781.64 atmosphere 995.0 43200 > th dose independent rect. 12 23
523 781.68 atmosphere 995.0 43200 > th dose independent rect. 15 22
526 781.69 radiation 40.0 270 < th dose dependent rect. 4 4
534 781.83 atmosphere 995.0 43200 < th dose independent rect. 10 19
538 781.88 temperature 30.0 270 < th dose independent rect. 3 6
539 781.89 wind 9.0 270 < th dose independent rect. 3 6
540 781.89 temperature 10.0 270 > th dose independent rect. 3 6
542 781.89 humidity 50.0 270 > th dose independent rect. 3 6
543 781.89 atmosphere 995.0 270 > th dose independent rect. 3 6
544 781.89 atmosphere 1015.0 270 < th dose independent rect. 3 6
554 781.98 humidity 50.0 270 > th dose dependent rect. 4 4
561 782.07 radiation 10.0 270 < th dose independent rect. 5 2
569 782.12 humidity 70.0 270 > th dose independent rect. 5 2
577 782.20 atmosphere 995.0 270 > th dose independent rect. 8 20
584 782.27 wind 7.0 270 < th dose independent rect. 5 2
586 782.27 temperature 10.0 270 > th dose independent rect. 5 2
589 782.27 humidity 50.0 270 > th dose independent rect. 5 2
591 782.27 atmosphere 995.0 270 > th dose independent rect. 5 2
592 782.27 atmosphere 1015.0 270 < th dose independent rect. 5 2
615 782.53 wind 9.0 720 > th dose independent rect. 12 3
616 782.54 atmosphere 995.0 43200 > th dose independent rect. 10 18
617 782.56 precipitation 0.1 270 < th dose independent rect. 5 2
618 782.56 precipitation 0.1 270 < th dose dependent rect. 5 2
628 782.61 temperature 20.0 270 < th dose independent rect. 22 1
635 782.68 precipitation 0.1 270 < th dose independent rect. 8 20
636 782.68 precipitation 0.1 270 < th dose dependent rect. 8 20
639 782.72 wind 7.0 720 > th dose dependent rect. 11 1
645 782.91 wind 9.0 270 < th dose independent rect. 8 20
650 783.01 atmosphere 995.0 43200 < th dose independent rect. 11 16
658 783.13 wind 7.0 720 > th dose independent rect. 11 1
661 783.20 atmosphere 995.0 43200 > th dose independent rect. 21 23
662 783.21 wind 1.0 43200 < th dose independent rect. 1 10
664 783.22 atmosphere 995.0 43200 > th dose independent no NA NA
667 783.26 wind 7.0 720 > th dose dependent rect. 8 4
674 783.35 wind 9.0 90 < th dose independent rect. 10 19
685 783.45 wind 9.0 270 < th dose dependent rect. 3 6
686 783.46 wind 9.0 720 > th dose dependent rect. 11 4
690 783.50 humidity 50.0 30 > th dose independent rect. 10 19
692 783.52 humidity 80.0 43200 > th dose dependent rect. 5 1
695 783.54 temperature 20.0 720 > th dose independent rect. 22 1
748 783.94 wind 1.0 270 > th dose independent rect. 23 14
770 784.16 temperature 20.0 270 > th dose independent sin 16 NA
772 784.18 humidity 90.0 43200 < th dose independent rect. 5 1
805 784.70 atmosphere 995.0 90 > th dose independent rect. 10 19
822 784.93 atmosphere 1005.0 720 < th dose independent rect. 20 2
823 784.96 atmosphere 1005.0 270 < th dose independent rect. 21 4
864 785.38 precipitation 0.1 270 < th dose independent rect. 23 14
865 785.38 precipitation 0.1 270 < th dose dependent rect. 23 14
866 785.39 radiation 40.0 14400 < th dose independent rect. 16 10
868 785.42 temperature 15.0 10 > th dose dependent rect. 21 13
879 785.47 atmosphere 995.0 43200 < th dose independent no NA NA
881 785.47 atmosphere 995.0 43200 < th dose independent rect. 21 22
887 785.51 atmosphere 995.0 43200 < th dose dependent rect. 14 10
892 785.54 atmosphere 995.0 43200 > th dose independent rect. 4 23
901 785.60 precipitation 0.1 270 < th dose independent rect. 3 6
904 785.60 precipitation 0.1 270 < th dose dependent rect. 3 6
937 785.90 humidity 90.0 270 > th dose independent rect. 5 2
939 785.93 atmosphere 995.0 43200 < th dose independent sin 17 NA
949 786.07 wind 9.0 270 < th dose independent rect. 7 22
951 786.10 humidity 70.0 14400 < th dose dependent rect. 21 1
962 786.13 radiation 40.0 14400 < th dose independent rect. 16 8
963 786.13 atmosphere 1015.0 30 < th dose independent rect. 14 20
973 786.18 wind 9.0 270 > th dose dependent rect. 19 23
974 786.19 temperature 15.0 270 > th dose independent rect. 11 23
985 786.31 radiation 40.0 14400 < th dose independent rect. 16 5
998 786.44 wind 9.0 90 > th dose independent sin 19 NA
999 786.44 wind 9.0 720 < th dose independent rect. 5 18