BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0189300 Os12g0189300|AK068710
(328 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G77060.1 | chr1:28951804-28953449 REVERSE LENGTH=340 375 e-104
AT1G21440.1 | chr1:7502325-7504103 REVERSE LENGTH=337 367 e-102
AT2G43180.1 | chr2:17953719-17955774 REVERSE LENGTH=480 117 7e-27
AT3G21720.1 | chr3:7652789-7655873 REVERSE LENGTH=577 56 2e-08
>AT1G77060.1 | chr1:28951804-28953449 REVERSE LENGTH=340
Length = 339
Score = 375 bits (963), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/261 (67%), Positives = 204/261 (78%), Gaps = 3/261 (1%)
Query: 27 IVQKTGFYAGFISGYAVSGSFLGTPDVGLLTPPEMAEVARRICASAPNTLFIADADTGGG 86
IVQ+TGF AGFISGYA+S S LG PD GLLTPPEMA AR +CASAPN IADADTGGG
Sbjct: 68 IVQQTGFSAGFISGYALSASLLGKPDFGLLTPPEMAATARSVCASAPNIPIIADADTGGG 127
Query: 87 NALNVKRTVQDLMAAGAAGCFLEDQAWPKKCGHMHGKQVIPAEEHAVKIAAAREVVGDRD 146
NALN++RTV+DL+AAGAAGCFLEDQAWPKKCGHM GKQVIPAEEHA KIA+AR+ +GD D
Sbjct: 128 NALNIQRTVKDLIAAGAAGCFLEDQAWPKKCGHMRGKQVIPAEEHAAKIASARDAIGDSD 187
Query: 147 FFIVARTDARSV---TGLDDAIRRANLYIDAGADACFVEAPRSDEELMEICRRTKGYRVC 203
FF+VARTD R+ +GL+DAI R NLY++AGADA FVEAPR D+EL EI +RTKGYRVC
Sbjct: 188 FFLVARTDVRATSAKSGLEDAIARVNLYMEAGADASFVEAPRDDDELKEIGKRTKGYRVC 247
Query: 204 NMLEGGKTPLHTRQELMEMGFHLIKSPLTTVYXXXXXXXXXXXXXXXXETTRDELHRLTT 263
NM+EGG TPLHT EL EMGFHLI PLT +Y +TRD L ++ T
Sbjct: 248 NMIEGGVTPLHTPDELKEMGFHLIVHPLTALYASTRALVDVLKTLKENGSTRDHLQKMAT 307
Query: 264 FTEFNNLVGLDSWLDIEVRFS 284
F EFN+LV LDSW ++E R+S
Sbjct: 308 FEEFNSLVDLDSWFELEARYS 328
>AT1G21440.1 | chr1:7502325-7504103 REVERSE LENGTH=337
Length = 336
Score = 367 bits (941), Expect = e-102, Method: Compositional matrix adjust.
Identities = 172/261 (65%), Positives = 203/261 (77%), Gaps = 3/261 (1%)
Query: 27 IVQKTGFYAGFISGYAVSGSFLGTPDVGLLTPPEMAEVARRICASAPNTLFIADADTGGG 86
IVQ+TGF A ISGYA+S LG PD GL+TPPEMA AR +CA+AP IADADTGGG
Sbjct: 66 IVQQTGFSAALISGYALSAVTLGKPDFGLITPPEMAATARSVCAAAPKIPIIADADTGGG 125
Query: 87 NALNVKRTVQDLMAAGAAGCFLEDQAWPKKCGHMHGKQVIPAEEHAVKIAAAREVVGDRD 146
NALNV+RTV+DL+AAGAAGCFLEDQAWPK+CGHM GK+VIPAEEHA KIA+AR+ +GD D
Sbjct: 126 NALNVQRTVKDLIAAGAAGCFLEDQAWPKRCGHMRGKEVIPAEEHAAKIASARDAIGDAD 185
Query: 147 FFIVARTDARSV---TGLDDAIRRANLYIDAGADACFVEAPRSDEELMEICRRTKGYRVC 203
FF++ARTDAR++ TGL DAI RANLY++AGADA FVEAPR D+EL EI RRTKGYR+C
Sbjct: 186 FFLIARTDARALSAKTGLSDAIDRANLYMEAGADASFVEAPRDDDELKEIGRRTKGYRLC 245
Query: 204 NMLEGGKTPLHTRQELMEMGFHLIKSPLTTVYXXXXXXXXXXXXXXXXETTRDELHRLTT 263
NMLEGG+TPLHT EL EMGFHLI PLT++Y TT+D L ++ T
Sbjct: 246 NMLEGGRTPLHTPDELKEMGFHLIAHPLTSLYASTRALVDVLKILKEKGTTKDHLEKMIT 305
Query: 264 FTEFNNLVGLDSWLDIEVRFS 284
F EFN LV LDSW ++E ++S
Sbjct: 306 FEEFNRLVNLDSWYELETKYS 326
>AT2G43180.1 | chr2:17953719-17955774 REVERSE LENGTH=480
Length = 479
Score = 117 bits (294), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 76/215 (35%), Positives = 120/215 (55%), Gaps = 13/215 (6%)
Query: 27 IVQKTGFYAGFISGYAVSGSFLGTPDVGLLTPPEMAEVARRICASAPNTLFIADADTGGG 86
++++ GF SG+++S S LG PD GL++ EM + ++I S + I D G G
Sbjct: 99 LIERAGFPYCITSGFSISASRLGLPDKGLISYGEMVDQGQQITQSV-SIPVIGDGGNGYG 157
Query: 87 NALNVKRTVQDLMAAGAAGCFLEDQAWPKKCGHMHG-KQVIPAEEHAVKIAAA----REV 141
NA+NVKRTV+ + AG AG + D+ C + ++V+ EE +++ AA RE
Sbjct: 158 NAMNVKRTVKGYIKAGFAGIIINDEVC---CENTKSERRVVSREEAVMRVKAAVDARREC 214
Query: 142 VGDRDFFIVARTDARSVTGLDDAIRRANLYIDAGADACFVEAPRSDEELMEICRRTKGY- 200
D D IVA+TD+R L++++ RA + DAGAD V++ S EE+ C
Sbjct: 215 --DSDIVIVAQTDSREAISLEESLIRARAFTDAGADVLSVDSLVSREEMKAFCNVYPLVP 272
Query: 201 RVCNMLE-GGKTPLHTRQELMEMGFHLIKSPLTTV 234
++ NMLE GGK P+ EL E+G+ L+ P++ +
Sbjct: 273 KLANMLESGGKIPILNPLELEEIGYKLVAYPISLI 307
>AT3G21720.1 | chr3:7652789-7655873 REVERSE LENGTH=577
Length = 576
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 77 FIADADTGGGNALNVKRTVQDLMAAGAAGCFLEDQAW-PKKCGHMHGKQVIPAEEHAVKI 135
IAD DTG G + + + GAAG +EDQ+ KKCGHM GK ++ EH ++
Sbjct: 172 IIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMAGKVLVAVSEHINRL 231
Query: 136 AAAR---EVVGDRDFFIVARTDARSVTGLDDAI 165
AAR +V+G + +VARTDA + T + I
Sbjct: 232 VAARLQFDVMGT-ETVLVARTDAVAATLIQSNI 263
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,515,221
Number of extensions: 206919
Number of successful extensions: 424
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 416
Number of HSP's successfully gapped: 4
Length of query: 328
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 229
Effective length of database: 8,392,385
Effective search space: 1921856165
Effective search space used: 1921856165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)