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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0158900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Harpin-induced 1 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0137) R2 : 0.00498
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0434 (0.0287) R2dN8 : 0.00643 R2N8 : 0.00498
σ : 0.257
deviance : 30.35
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
28.22 0.25 3.06 0.189 0.0771 0.775 0.0216 1.12 -0.00716 10.2 19.76 11 -- --
28.72 0.252 3.05 0.207 0.0694 0.391 -0.041 -- -0.00549 9.71 19.76 11 -- --
28.19 0.249 3.06 0.191 0.0772 0.792 -- 1.16 -0.00713 10.2 19.73 11 -- --
28.7 0.25 3.05 0.204 0.0731 0.347 -- -- -0.00228 9.8 20.59 11 -- --
28.53 0.25 3.06 0.188 -- 0.756 -- 1.12 -0.00926 -- 19.64 11 -- --
29.57 0.255 3.05 0.146 0.0595 -- 0.0412 -- -0.0277 8.15 -- -- -- --
29.57 0.255 3.05 0.148 0.0592 -- -- -- -0.0276 8.38 -- -- -- --
29 0.251 3.05 0.2 -- 0.345 -- -- -0.00592 -- 20.05 11 -- --
29.7 0.254 3.05 -- 0.0694 0.218 -- -- -0.0286 9.33 21.3 11 -- --
29.77 0.255 3.05 0.148 -- -- -- -- -0.027 -- -- -- -- --
30.15 0.257 3.06 -- 0.0599 -- -- -- -0.0441 8.2 -- -- -- --
29.96 0.255 3.05 -- -- 0.214 -- -- -0.0318 -- 20.6 11 -- --
30.35 0.257 3.06 -- -- -- -- -- -0.0434 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.80 wind 1.0 10 < th dose independent rect. 22 3
3 27.83 wind 1.0 10 < th dose dependent rect. 22 3
11 27.84 wind 1.0 10 < th dose dependent rect. 15 10
43 27.87 wind 1.0 10 < th dose independent rect. 15 10
45 27.87 wind 1.0 10 < th dose independent rect. 12 13
47 27.88 temperature 20.0 270 < th dose independent rect. 22 4
52 27.89 wind 1.0 10 < th dose independent rect. 17 8
54 27.89 radiation 10.0 14400 < th dose dependent rect. 23 1
114 27.97 wind 1.0 10 < th dose dependent sin 17 NA
117 27.97 wind 1.0 10 < th dose dependent rect. 7 19
153 28.01 atmosphere 1015.0 720 < th dose independent rect. 3 8
171 28.03 humidity 80.0 90 < th dose dependent rect. 24 3
185 28.05 temperature 20.0 10 < th dose dependent rect. 24 12
189 28.06 humidity 80.0 90 < th dose independent rect. 24 3
203 28.07 temperature 20.0 10 < th dose dependent sin 5 NA
243 28.12 wind 1.0 10 > th dose independent rect. 14 11
272 28.15 precipitation 0.1 720 < th dose independent rect. 23 16
276 28.15 precipitation 0.1 720 < th dose dependent rect. 23 16
281 28.16 temperature 25.0 10 > th dose independent rect. 21 2
295 28.17 temperature 20.0 10 < th dose dependent rect. 6 23
296 28.18 temperature 25.0 90 > th dose independent rect. 21 2
309 28.19 wind 1.0 90 < th dose independent rect. 17 7
320 28.19 temperature 20.0 10 < th dose dependent rect. 11 18
357 28.22 temperature 20.0 10 < th dose dependent rect. 21 16
379 28.23 temperature 15.0 720 > th dose independent rect. 3 8
408 28.24 temperature 20.0 10 < th dose dependent rect. 24 4
424 28.24 temperature 20.0 10 < th dose dependent rect. 11 21
433 28.25 precipitation 0.1 720 < th dose independent rect. 3 8
437 28.25 temperature 20.0 10 < th dose dependent no NA NA
440 28.25 precipitation 0.1 720 < th dose dependent rect. 3 8
483 28.26 temperature 25.0 10 > th dose dependent rect. 21 2
513 28.27 temperature 20.0 10 < th dose dependent rect. 3 23
517 28.28 wind 9.0 720 < th dose independent rect. 3 8
524 28.28 temperature 20.0 270 < th dose dependent rect. 22 4
538 28.29 temperature 20.0 90 > th dose independent rect. 3 22
570 28.30 wind 1.0 10 < th dose dependent rect. 17 16
610 28.31 temperature 10.0 30 > th dose dependent rect. 23 23
616 28.32 temperature 25.0 90 > th dose dependent rect. 21 1
635 28.32 temperature 20.0 270 < th dose dependent rect. 8 20
654 28.33 wind 1.0 10 < th dose independent rect. 7 20
656 28.33 precipitation 0.1 14400 > th dose dependent rect. 21 2
683 28.34 precipitation 0.1 14400 < th dose independent rect. 20 3
689 28.34 precipitation 0.1 14400 < th dose dependent rect. 20 3
719 28.35 temperature 20.0 720 > th dose independent rect. 23 1
720 28.35 precipitation 0.1 14400 > th dose independent rect. 20 3
722 28.35 atmosphere 995.0 720 > th dose independent rect. 3 8
728 28.35 temperature 10.0 720 > th dose independent rect. 11 16
744 28.35 wind 1.0 10 < th dose dependent rect. 22 18
773 28.36 wind 1.0 10 < th dose dependent no NA NA
858 28.38 temperature 10.0 720 > th dose independent rect. 15 8
860 28.38 temperature 10.0 720 > th dose independent rect. 23 16
863 28.38 temperature 20.0 90 > th dose independent rect. 14 23
865 28.38 precipitation 0.1 14400 > th dose dependent rect. 20 4
931 28.40 temperature 20.0 10 < th dose dependent rect. 21 8
977 28.41 temperature 20.0 30 > th dose independent rect. 23 23
981 28.41 temperature 10.0 720 > th dose dependent rect. 23 7