BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0158900 Os12g0158900|Os12g0158900
(224 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0158900 Harpin-induced 1 domain containing protein 330 4e-91
Os12g0159000 Harpin-induced 1 domain containing protein 118 3e-27
>Os12g0158900 Harpin-induced 1 domain containing protein
Length = 224
Score = 330 bits (847), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 172/224 (76%), Positives = 172/224 (76%)
Query: 1 MAMARAGGGGTCCSCLCAFLVCIGVAVLIYWATYQPHRIRAAVESAELSNLTVVVRNGTA 60
MAMARAGGGGTCCSCLCAFLVCIGVAVLIYWATYQPHRIRAAVESAELSNLTVVVRNGTA
Sbjct: 1 MAMARAGGGGTCCSCLCAFLVCIGVAVLIYWATYQPHRIRAAVESAELSNLTVVVRNGTA 60
Query: 61 DXXXXXXVVYYRLAVNVTMYNPSGRAGVHYDAIRPRXXXXXXXXXXXXXXXXTVPGVFHQ 120
D VVYYRLAVNVTMYNPSGRAGVHYDAIRPR TVPGVFHQ
Sbjct: 61 DGGGSGGVVYYRLAVNVTMYNPSGRAGVHYDAIRPRLLLLLAGGASLGAANATVPGVFHQ 120
Query: 121 PRMSTTVVAIDFDRSXXXXXXXXXXXXXELDKEIKXXXXXXXXXFEMVIDARVRYKLGFI 180
PRMSTTVVAIDFDRS ELDKEIK FEMVIDARVRYKLGFI
Sbjct: 121 PRMSTTVVAIDFDRSGGGGVAVAGDVAAELDKEIKGSGGGGEVGFEMVIDARVRYKLGFI 180
Query: 181 PIRARPKVRCPVRIPVKAERRXXXXXXXXVTGFLRSGDRCTVKY 224
PIRARPKVRCPVRIPVKAERR VTGFLRSGDRCTVKY
Sbjct: 181 PIRARPKVRCPVRIPVKAERRGGGGGGGGVTGFLRSGDRCTVKY 224
>Os12g0159000 Harpin-induced 1 domain containing protein
Length = 192
Score = 118 bits (296), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 98/214 (45%), Gaps = 31/214 (14%)
Query: 11 TCCSCLCAFLVCIGVAVLIYWATYQPHRIRAAVESAELSNLTVVVRNGTADXXXXXXVVY 70
TCC L F+V G VLIYWA +QPH IRA V SA+L+NLTV V
Sbjct: 10 TCCGSLFTFIVTGGFVVLIYWAIFQPHHIRATVASADLTNLTVA-----------GAAVS 58
Query: 71 YRLAVNVTMYNPSGRAGVHYDAIRPRXXXXXXXXXXXXXXXXTVPGVFHQPRMSTTVVAI 130
Y+LAV + +YNPS R ++YD + P F+Q R S+ V
Sbjct: 59 YKLAVRLNLYNPSLRVNIYYDELDSE---LRFRGERLGHATGATPAEFYQRRKSSDDVTF 115
Query: 131 DFDRSXXXXXXXXXXXXXELDKEIKXXXXXXXXXFEMVIDARVRYKLGFIPIRARPKVRC 190
+F EL KE E+ +D +VRY+ G I IR +P++ C
Sbjct: 116 EF---AGTGVAVAGDAAGELGKE----KGKGSVSLEVAVDGKVRYRFGSIKIRQKPRIWC 168
Query: 191 PVRIPVKAERRXXXXXXXXVTGFLRSGDRCTVKY 224
+ IPV A+ G L SGDRC+VKY
Sbjct: 169 SLTIPVTADG----------GGRLDSGDRCSVKY 192
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.140 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,676,693
Number of extensions: 163410
Number of successful extensions: 500
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 499
Number of HSP's successfully gapped: 2
Length of query: 224
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 127
Effective length of database: 11,971,043
Effective search space: 1520322461
Effective search space used: 1520322461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 154 (63.9 bits)