BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0158900 Os12g0158900|Os12g0158900
(224 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35460.1 | chr2:14905788-14906504 FORWARD LENGTH=239 64 7e-11
AT5G06320.1 | chr5:1931016-1931711 REVERSE LENGTH=232 59 3e-09
AT2G35980.1 | chr2:15110635-15111318 FORWARD LENGTH=228 51 5e-07
AT3G11650.1 | chr3:3676264-3676986 REVERSE LENGTH=241 49 2e-06
>AT2G35460.1 | chr2:14905788-14906504 FORWARD LENGTH=239
Length = 238
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 77/188 (40%), Gaps = 22/188 (11%)
Query: 13 CSCLCAFLVCIGVAVLIYWATYQPHRIRAAVESAELSNLTVVVRNGTADXXXXXXVVYYR 72
C+ L LVC+GV LI W +P+ ++ V A+L+ R+ ++Y
Sbjct: 55 CNILIGVLVCLGVVALILWFILRPNVVKFQVTEADLTRFEFDPRSHN---------LHYN 105
Query: 73 LAVNVTMYNPSGRAGVHYDAIRPRXXXXXXXXXXXXXXXXTVPGVFHQPRMSTTVVAIDF 132
+++N ++ NP+ R G+HYD + R F+Q +TTVV +
Sbjct: 106 ISLNFSIRNPNQRLGIHYDQLEVRGYYGDQRFSAANMTS------FYQGHKNTTVVGTEL 159
Query: 133 DRSXXXXXXXXXXXXXELDKEIKXXXXXXXXXFEMVIDARVRYKLGFIPIRA-RPKVRCP 191
+ D+ F++ R+K GF+ A RPK++C
Sbjct: 160 NGQKLVLLGAGGRRDFREDRRSGVYRIDVKLRFKL------RFKFGFLNSWAVRPKIKCH 213
Query: 192 VRIPVKAE 199
+++P+
Sbjct: 214 LKVPLSTS 221
>AT5G06320.1 | chr5:1931016-1931711 REVERSE LENGTH=232
Length = 231
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 85/212 (40%), Gaps = 31/212 (14%)
Query: 14 SCLCAFLVCIGVAVLIYWATYQPHRIRAAVESAELSNLTVVVRNGTADXXXXXXVVYYRL 73
+ L V +G+A LI W ++P+ I+ V A+L+ T+ N + Y L
Sbjct: 50 NILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLDPTNN----------LRYNL 99
Query: 74 AVNVTMYNPSGRAGVHYDAIRPRXXXXXXXXXXXXXXXXTVPGVFHQPRMSTTVVAIDFD 133
+N T+ NP+ R GV+YD I R F+Q +TTVV
Sbjct: 100 DLNFTIRNPNRRIGVYYDEIEVRGYYGDQRFGMSNNISK-----FYQGHKNTTVVGTKL- 153
Query: 134 RSXXXXXXXXXXXXXELDKEIKXXXXXXXXXFEMVIDARVRYKLGFI-PIRARPKVRCPV 192
+L++++ + ++R+K G I R +PK++C +
Sbjct: 154 -VGQQLVLLDGGERKDLNEDVNSQIYRIDAKLRL----KIRFKFGLIKSWRFKPKIKCDL 208
Query: 193 RIPVKAERRXXXXXXXXVTGFLRSGDRCTVKY 224
++P+ + +GF+ +C V +
Sbjct: 209 KVPLTSN---------STSGFVFQPTKCDVDF 231
>AT2G35980.1 | chr2:15110635-15111318 FORWARD LENGTH=228
Length = 227
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 76/202 (37%), Gaps = 31/202 (15%)
Query: 5 RAGGGGTCCSCLCAF--------LVCIGVAVLIYWATYQPHRIRAAVESAELSNLTVVVR 56
R G G C CL + +V +GVA LI+W +P I+ V A L+
Sbjct: 26 RRGHGRGCGCCLLSLFVKVIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRF----- 80
Query: 57 NGTADXXXXXXVVYYRLAVNVTMYNPSGRAGVHYDAIRPRXXXXXXXXXXXXXXXXTVPG 116
D ++ Y LA+ V + NP+ R G++YD I
Sbjct: 81 ----DHTSPDNILRYNLALTVPVRNPNKRIGLYYDRIEAHAYYEGKRFSTITLTP----- 131
Query: 117 VFHQPRMSTTVVAIDFDRSXXXXXXXXXXXXXELDKEIKXXXXXXXXXFEMVIDARVRYK 176
F+Q +TTV+ F + + E+ RVR+K
Sbjct: 132 -FYQGHKNTTVLTPTFQGQNLVIFNAGQ------SRTLNAERISGVYNIEIKFRLRVRFK 184
Query: 177 LGFIPI-RARPKVRC-PVRIPV 196
LG + R +PKV C +R+P+
Sbjct: 185 LGDLKFRRIKPKVDCDDLRLPL 206
>AT3G11650.1 | chr3:3676264-3676986 REVERSE LENGTH=241
Length = 240
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 74/200 (37%), Gaps = 33/200 (16%)
Query: 12 CCSCLCAFLVC---------IGVAVLIYWATYQPHRIRAAVESAELSNLTVVVRNGTADX 62
CC C L+C +GVA LI W ++P+ ++ V A L+ + N
Sbjct: 46 CCGCCILSLICNILIAVAVILGVAALILWLIFRPNAVKFYVADANLNRFSFDPNNN---- 101
Query: 63 XXXXXVVYYRLAVNVTMYNPSGRAGVHYDAIRPRXXXXXXXXXXXXXXXXTVPGVFHQPR 122
++Y L +N T+ NP+ R GV+YD F+Q
Sbjct: 102 ------LHYSLDLNFTIRNPNQRVGVYYDEFSVSGYYGDQRFGSANVSS------FYQGH 149
Query: 123 MSTTVVAIDFDRSXXXXXXXXXXXXXELDKEIKXXXXXXXXXFEMVIDARVRYKLGFI-P 181
+TTV+ + ++K + VR+K FI
Sbjct: 150 KNTTVILTKIEGQNLVVLGDGART------DLKDDEKSGIYRINAKLRLSVRFKFWFIKS 203
Query: 182 IRARPKVRC-PVRIPVKAER 200
+ +PK++C ++IP+ +
Sbjct: 204 WKLKPKIKCDDLKIPLGSSN 223
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.140 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,340,505
Number of extensions: 88920
Number of successful extensions: 223
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 4
Length of query: 224
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 129
Effective length of database: 8,502,049
Effective search space: 1096764321
Effective search space used: 1096764321
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 110 (47.0 bits)