Os12g0143200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SPla/RYanodine receptor SPRY domain containing protein.
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Os12g0143200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SPla/RYanodine receptor SPRY domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.26 | 0.267 | 9.17 | 1.76 | 0.298 | -1.04 | 0.304 | 2.14 | 0.134 | 12.7 | 8.787 | 1337 | -- | -- |
| 37.31 | 0.284 | 9.23 | 1.32 | 0.288 | -0.911 | 0.312 | -- | 0.00601 | 13.3 | 11.94 | 2278 | -- | -- |
| 32.64 | 0.266 | 9.17 | 1.74 | 0.29 | -1.04 | -- | 2.05 | 0.129 | 12.7 | 7.3 | 1314 | -- | -- |
| 35.85 | 0.279 | 9.23 | 1.29 | 0.228 | -1.07 | -- | -- | 0.00941 | 13.2 | 14.32 | 1138 | -- | -- |
| 35.53 | 0.278 | 9.18 | 1.69 | -- | -1.22 | -- | 1.81 | 0.123 | -- | 7.201 | 1052 | -- | -- |
| 53.4 | 0.343 | 9.27 | 0.976 | 0.369 | -- | 0.226 | -- | -0.173 | 13 | -- | -- | -- | -- |
| 53.62 | 0.343 | 9.27 | 0.985 | 0.369 | -- | -- | -- | -0.172 | 13 | -- | -- | -- | -- |
| 38.33 | 0.288 | 9.22 | 1.31 | -- | -1.16 | -- | -- | 0.0336 | -- | 14.56 | 1032 | -- | -- |
| 74.43 | 0.402 | 9.28 | -- | 0.269 | -0.554 | -- | -- | -0.216 | 13.5 | 14.29 | 905 | -- | -- |
| 62.08 | 0.368 | 9.27 | 0.971 | -- | -- | -- | -- | -0.179 | -- | -- | -- | -- | -- |
| 79.17 | 0.416 | 9.29 | -- | 0.353 | -- | -- | -- | -0.282 | 12.9 | -- | -- | -- | -- |
| 78.61 | 0.413 | 9.28 | -- | -- | -0.596 | -- | -- | -0.201 | -- | 17 | 970 | -- | -- |
| 86.94 | 0.435 | 9.3 | -- | -- | -- | -- | -- | -0.287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 21 |
| 8 | 31.68 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 9 | 31.69 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 12 | 31.71 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 5 |
| 19 | 31.76 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 21 | 31.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 93 | 32.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 21 |
| 107 | 32.04 | temperature | 10 | 1440 | > th | dose dependent | sin | 14 | NA |
| 164 | 32.13 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 17 |
| 208 | 32.21 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 284 | 32.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 354 | 32.43 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 359 | 32.43 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 23 |
| 360 | 32.43 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 367 | 32.44 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 423 | 32.48 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 612 | 32.65 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 654 | 32.69 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 687 | 32.73 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 790 | 32.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |