BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0143200 Os12g0143200|AK106270
         (414 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G51450.1  | chr1:19074399-19076220 FORWARD LENGTH=510          330   1e-90

>AT1G51450.1 | chr1:19074399-19076220 FORWARD LENGTH=510
          Length = 509

 Score =  330 bits (845), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 166/301 (55%), Positives = 205/301 (68%), Gaps = 20/301 (6%)

Query: 111 VWTRPNSRKGKKKAKQPXXXXXXXXXXXXXRLPKPSSGEDELVLTPAPRFAAERNDDAPD 170
           VW   ++RKGKKK+K                 P P++ ED++++TP PRF  ++ DD PD
Sbjct: 226 VWVTKSTRKGKKKSK--------------ANTPNPAAVEDKVLITPVPRFP-DKGDDTPD 270

Query: 171 RPVLLSRVFKSDKVEVSDDRLTAGSTKGYRMVRATRGVAAGAWYFEVKVLHLGSTGHTRL 230
             + LS+V+K++KVE+S+DRLTAGS+KGYRMVRATRGV  GAWYFE+KVL LG TGHTRL
Sbjct: 271 LEICLSKVYKAEKVEISEDRLTAGSSKGYRMVRATRGVVEGAWYFEIKVLSLGETGHTRL 330

Query: 231 GWATNNADIHAPVGYDVFGFGYRDMDGTKVHKAWRANYAEQGYGDGDVLGFYIHLPDGEL 290
           GW+T+  D+ APVGYD   FG+RD+DG K+HKA R  YAE+GY +GDV+GFYI+LPDGE 
Sbjct: 331 GWSTDKGDLQAPVGYDGNSFGFRDIDGCKIHKALRETYAEEGYKEGDVIGFYINLPDGES 390

Query: 291 YEPKQPFLVHYKGLPFRAEAPKAAEQKTPDPVPGSEICYFKNGICQGTAFVDIPGGRYYP 350
           + PK P  V YKG  +   AP A E+  P  VPGSEI +FKNG+CQG AF DI GGRYYP
Sbjct: 391 FAPKPPHYVFYKGQRYIC-APDAKEEP-PKVVPGSEISFFKNGVCQGAAFTDIVGGRYYP 448

Query: 351 AASMYTLPDQPNCQVRXXXXXXXXXXXXXXXGRLIPRPMSDVPYRPFELANGGPAENGTA 410
           AASMYTLPDQ NC V+               GR  PRPM +VPY  F   NG    NG+ 
Sbjct: 449 AASMYTLPDQSNCLVKFNFGPSFEFFPEDFGGRATPRPMWEVPYHGF---NGRLETNGSE 505

Query: 411 E 411
           +
Sbjct: 506 D 506



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.135    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,140,757
Number of extensions: 338377
Number of successful extensions: 796
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 794
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 313
Effective length of database: 8,337,553
Effective search space: 2609654089
Effective search space used: 2609654089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)