Os12g0133400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 4'-phosphopantetheinyl transferase domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os12g0133400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : 4'-phosphopantetheinyl transferase domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.04 | 0.274 | 8.39 | -1.36 | 0.336 | 0.992 | 0.139 | -1.23 | -0.213 | 12.3 | 19.56 | 1500 | -- | -- |
| 35.13 | 0.276 | 8.35 | -1.05 | 0.407 | 1.12 | 0.167 | -- | -0.131 | 11.4 | 16.9 | 2073 | -- | -- |
| 34.12 | 0.272 | 8.39 | -1.36 | 0.34 | 0.991 | -- | -1.25 | -0.213 | 12.3 | 19.61 | 1480 | -- | -- |
| 35.24 | 0.276 | 8.35 | -1.04 | 0.404 | 1.11 | -- | -- | -0.125 | 11.3 | 17.09 | 2065 | -- | -- |
| 40.56 | 0.298 | 8.35 | -0.971 | -- | 1.11 | -- | -0.68 | -0.101 | -- | 19.61 | 1480 | -- | -- |
| 61.45 | 0.368 | 8.3 | -0.641 | 0.302 | -- | 0.121 | -- | 0.109 | 12 | -- | -- | -- | -- |
| 61.52 | 0.367 | 8.3 | -0.636 | 0.301 | -- | -- | -- | 0.109 | 12 | -- | -- | -- | -- |
| 40.46 | 0.298 | 8.34 | -0.88 | -- | 1.17 | -- | -- | -0.0748 | -- | 17.63 | 1633 | -- | -- |
| 58.22 | 0.355 | 8.31 | -- | 0.33 | 0.596 | -- | -- | 0.0563 | 11.8 | 21.2 | 1499 | -- | -- |
| 67.23 | 0.383 | 8.3 | -0.646 | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
| 72.19 | 0.397 | 8.28 | -- | 0.31 | -- | -- | -- | 0.18 | 12.1 | -- | -- | -- | -- |
| 59.83 | 0.361 | 8.31 | -- | -- | 0.943 | -- | -- | 0.0524 | -- | 17.63 | 1633 | -- | -- |
| 78.23 | 0.413 | 8.29 | -- | -- | -- | -- | -- | 0.177 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 4 | 32.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 7 | 33.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 11 | 33.13 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 36 | 33.39 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 48 | 33.46 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 100 | 33.81 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 166 | 34.07 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 168 | 34.07 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 175 | 34.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 192 | 34.15 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 198 | 34.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 200 | 34.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 278 | 34.35 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 280 | 34.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 285 | 34.36 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 289 | 34.37 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 291 | 34.37 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 10 |
| 356 | 34.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 16 |
| 405 | 34.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 570 | 34.79 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 791 | 35.12 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 889 | 35.24 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 12 |
| 966 | 35.32 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 994 | 35.35 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 2 |