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Os12g0131100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6- phosphate amidotransferase) (GFAT).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.98 (0.0323) R2 : 0.0238
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.226 (0.068) R2dN8 : 0.0307 R2N8 : 0.0238
σ : 0.608
deviance : 169.72
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
128.41 0.532 7.97 0.886 0.167 0.879 1.15 0.623 0.311 18.2 5.008 93 -- --
128.49 0.528 7.97 0.908 0.137 0.791 1.14 -- 0.304 18 4.705 92 -- --
130.73 0.533 7.97 0.884 0.219 0.812 -- 0.988 0.324 16.4 5 92 -- --
132.31 0.536 7.97 0.827 0.141 0.758 -- -- 0.31 16.5 4.7 92 -- --
132.73 0.537 7.98 0.898 -- 0.968 -- 1.06 0.303 -- 4.9 92 -- --
143.92 0.562 7.97 0.662 0.514 -- 0.456 -- 0.309 16.6 -- -- -- --
144.37 0.563 7.96 0.666 0.516 -- -- -- 0.312 16.3 -- -- -- --
133.56 0.538 7.96 0.868 -- 0.792 -- -- 0.309 -- 4.7 92 -- --
149.69 0.57 7.98 -- 0.275 0.491 -- -- 0.223 16.5 4.853 92 -- --
158.73 0.589 7.96 0.645 -- -- -- -- 0.298 -- -- -- -- --
156.06 0.584 7.98 -- 0.503 -- -- -- 0.238 16.3 -- -- -- --
152.3 0.575 7.98 -- -- 0.634 -- -- 0.217 -- 4.6 92 -- --
169.72 0.608 7.98 -- -- -- -- -- 0.226 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 122.51 radiation 1.0 1440 > th dose independent rect. 10 3
4 124.36 wind 5.0 90 < th dose independent rect. 7 23
6 124.47 radiation 20.0 1440 < th dose dependent rect. 11 1
7 124.71 radiation 1.0 1440 < th dose independent rect. 11 1
8 124.71 radiation 1.0 1440 < th dose dependent rect. 11 1
10 124.99 wind 5.0 90 < th dose independent rect. 8 21
25 126.47 wind 5.0 90 > th dose independent rect. 12 23
42 127.10 radiation 20.0 1440 < th dose independent rect. 11 2
43 127.19 radiation 10.0 1440 < th dose dependent rect. 9 6
53 127.36 wind 7.0 720 < th dose independent rect. 7 22
58 127.52 wind 7.0 720 < th dose independent rect. 17 18
59 127.52 wind 3.0 90 > th dose dependent rect. 12 23
62 127.55 radiation 1.0 1440 < th dose independent rect. 13 1
63 127.55 radiation 1.0 1440 < th dose dependent rect. 13 1
65 127.64 wind 7.0 720 < th dose independent rect. 15 14
73 127.80 wind 1.0 1440 < th dose independent rect. 6 1
82 127.95 wind 5.0 90 < th dose independent rect. 13 23
84 127.99 wind 5.0 90 > th dose independent rect. 21 22
89 128.08 wind 7.0 4320 > th dose independent rect. 15 3
94 128.21 wind 5.0 90 > th dose independent rect. 9 23
95 128.22 wind 5.0 90 > th dose independent rect. 19 23
97 128.22 radiation 10.0 1440 < th dose dependent rect. 8 9
99 128.23 wind 5.0 90 < th dose independent sin 17 NA
102 128.26 wind 5.0 90 > th dose independent rect. 23 20
103 128.27 wind 5.0 90 < th dose independent rect. 15 23
113 128.40 wind 7.0 4320 < th dose independent rect. 15 3
116 128.43 wind 5.0 90 > th dose independent rect. 23 23
125 128.50 wind 1.0 1440 < th dose dependent rect. 6 1
128 128.53 wind 5.0 90 > th dose independent no NA NA
130 128.55 wind 5.0 90 > th dose independent rect. 7 23
133 128.58 wind 5.0 90 < th dose independent no NA NA
164 128.82 wind 5.0 90 > th dose independent rect. 5 23
168 128.85 wind 1.0 1440 > th dose independent rect. 6 1
194 129.09 wind 5.0 720 < th dose independent rect. 17 2
206 129.14 radiation 10.0 1440 < th dose dependent rect. 8 19
213 129.19 wind 3.0 90 > th dose dependent rect. 24 18
219 129.24 wind 7.0 720 < th dose independent rect. 7 14
220 129.24 radiation 10.0 4320 < th dose dependent rect. 19 10
222 129.27 wind 5.0 90 > th dose independent sin 19 NA
224 129.31 wind 7.0 720 < th dose independent rect. 8 17
239 129.40 wind 7.0 4320 > th dose independent rect. 17 1
270 129.52 wind 3.0 90 > th dose dependent rect. 21 21
280 129.58 wind 7.0 720 < th dose independent rect. 15 5
284 129.59 wind 7.0 720 < th dose independent rect. 13 7
285 129.59 radiation 20.0 14400 < th dose independent rect. 19 11
288 129.61 wind 7.0 720 < th dose independent rect. 17 10
292 129.62 wind 7.0 4320 > th dose dependent rect. 15 1
306 129.68 wind 7.0 4320 > th dose dependent rect. 15 4
308 129.69 wind 3.0 90 > th dose dependent rect. 24 23
314 129.73 wind 3.0 90 > th dose dependent rect. 19 23
332 129.85 wind 3.0 90 > th dose dependent sin 19 NA
343 129.96 wind 5.0 90 > th dose independent rect. 17 23
345 129.96 wind 7.0 90 < th dose dependent rect. 8 21
347 129.98 temperature 20.0 1440 > th dose independent rect. 6 1
367 130.04 wind 3.0 90 > th dose dependent rect. 9 23
380 130.11 wind 5.0 90 > th dose independent rect. 11 8
382 130.11 wind 5.0 90 < th dose independent rect. 17 12
416 130.26 radiation 10.0 1440 < th dose dependent sin 21 NA
434 130.32 radiation 20.0 1440 < th dose dependent rect. 11 16
445 130.35 wind 3.0 90 > th dose dependent no NA NA
447 130.36 atmosphere 1005.0 90 > th dose independent rect. 18 11
449 130.37 wind 7.0 4320 > th dose dependent rect. 17 1
457 130.40 wind 5.0 90 < th dose independent rect. 17 20
459 130.41 wind 1.0 14400 > th dose independent rect. 24 2
463 130.42 wind 3.0 90 > th dose dependent rect. 7 23
470 130.44 wind 7.0 720 < th dose independent rect. 13 23
485 130.51 wind 5.0 90 < th dose independent rect. 9 12
491 130.55 wind 7.0 720 < th dose independent sin 14 NA
493 130.55 wind 5.0 90 > th dose independent rect. 11 12
499 130.57 humidity 60.0 14400 > th dose independent rect. 20 10
518 130.60 wind 3.0 90 > th dose dependent rect. 5 23
547 130.69 radiation 10.0 4320 < th dose dependent rect. 21 8
561 130.71 wind 3.0 14400 < th dose dependent rect. 1 1
572 130.73 wind 3.0 90 > th dose dependent rect. 11 7
603 130.80 precipitation 0.1 90 > th dose independent rect. 3 16
607 130.81 temperature 20.0 1440 < th dose independent rect. 6 1
654 130.91 radiation 20.0 1440 < th dose independent rect. 11 8
681 130.96 radiation 20.0 1440 < th dose independent rect. 11 16
682 130.96 radiation 20.0 1440 < th dose independent rect. 11 18
685 130.96 wind 9.0 720 < th dose dependent rect. 17 2
704 131.01 wind 7.0 720 < th dose independent sin 19 NA
723 131.04 wind 5.0 90 < th dose independent rect. 2 23
726 131.06 wind 1.0 90 > th dose dependent rect. 12 11
739 131.10 humidity 70.0 14400 < th dose dependent rect. 21 1
808 131.27 wind 7.0 720 < th dose independent rect. 17 8
811 131.28 wind 1.0 14400 < th dose independent rect. 24 2
817 131.30 wind 5.0 90 < th dose independent rect. 9 16
849 131.40 wind 5.0 90 > th dose independent rect. 9 10
868 131.45 precipitation 0.1 720 < th dose independent rect. 7 22
870 131.45 precipitation 0.1 720 < th dose dependent rect. 7 22
875 131.46 humidity 90.0 720 > th dose dependent rect. 20 3
884 131.47 atmosphere 1005.0 270 < th dose independent rect. 22 8
894 131.49 precipitation 0.1 90 > th dose independent rect. 21 22
897 131.49 humidity 90.0 720 > th dose dependent rect. 20 1
929 131.55 radiation 1.0 720 > th dose independent rect. 8 11
944 131.56 radiation 40.0 4320 < th dose independent rect. 6 2