BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0131100 Os12g0131100|AK105856
         (320 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24090.1  | chr3:8697838-8700971 REVERSE LENGTH=678            524   e-149

>AT3G24090.1 | chr3:8697838-8700971 REVERSE LENGTH=678
          Length = 677

 Score =  524 bits (1349), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/320 (79%), Positives = 277/320 (86%)

Query: 1   RRSRRLVFIGCGTSYNAALAARPFVEELTGIPVTMEVASDLLDRQGPIYREDTAVFVSQS 60
           RRSRR+VFIGCGTSYNAALA+RP +EEL+GIPV+ME+ASDL DRQGPIYREDTAVFVSQS
Sbjct: 358 RRSRRIVFIGCGTSYNAALASRPILEELSGIPVSMEIASDLWDRQGPIYREDTAVFVSQS 417

Query: 61  GEXXXXXXXXXXXXENGALCVGITNTVGSTLSRRTHCGVHINAGCEIGVASTKAYTSQIV 120
           GE            ENGALCVGITNTVGS+++R+THCGVHINAG EIGVASTKAYTSQIV
Sbjct: 418 GETADTLLALDYARENGALCVGITNTVGSSIARKTHCGVHINAGAEIGVASTKAYTSQIV 477

Query: 121 VMVMVALAVGSDQISTQVRRQAIISGLSNLPSNVSEVLKLDTEMKXXXXXXXXXXXXXVF 180
           VMVM+ALA+GSD IS+Q RR+AII GL +LP  V EVLKLD EMK             VF
Sbjct: 478 VMVMLALAIGSDTISSQKRREAIIDGLLDLPYKVKEVLKLDDEMKDLAQLLIDEQSLLVF 537

Query: 181 GRGYNYATALEGALKVKEVALMHSEGMLAGEMKHGPLALVDENLPIIVIATRDACFSKQQ 240
           GRGYNYATALEGALKVKEVALMHSEG+LAGEMKHGPLALVDENLPI VIATRDACFSKQQ
Sbjct: 538 GRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDENLPIAVIATRDACFSKQQ 597

Query: 241 SVIQQLLSRKGRLIVMCSKGDASAVCPSGSCRVIEVPEVADCLQPVINIIPLQLLAYHLT 300
           SVIQQL +RKGRLIVMCSKGDA++V  SGSCR IEVP+V DCLQPVINI+PLQLLAYHLT
Sbjct: 598 SVIQQLHARKGRLIVMCSKGDAASVSSSGSCRAIEVPQVEDCLQPVINIVPLQLLAYHLT 657

Query: 301 VLRGFDVDQPRNLAKSVTTQ 320
           VLRG +VDQPRNLAKSVTTQ
Sbjct: 658 VLRGHNVDQPRNLAKSVTTQ 677



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,499,171
Number of extensions: 187370
Number of successful extensions: 396
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 221
Effective length of database: 8,392,385
Effective search space: 1854717085
Effective search space used: 1854717085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)