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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0129300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.59 (0.0383) R2 : 0.379
β1 : 0.617 (0.135) R2dD : 0.0307 R2D : -0.0037
β2 : 1.36 (0.0913) R2dC : 0.306 R2C : 0.278
β3 : 45.3 (6.02) R2dE : 6.03 R2E : -6.18
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 101 (13.5) R2dD*E : 6.01 R2D*E : -5.74
γ1 : 0.116 (0.0773) R2dN8 : 0.0041 R2N8 : -0.0241
σ : 0.677
deviance : 211.31
__
_____
C
peak time of C : 20.5
E
wheather : humidity
threshold : 59.87
memory length : 78
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.97
open length of G : 0.995

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
209.28 0.68 3.59 0.638 1.36 45 0.805 101 0.115 20.5 59.94 83 8.98 0.989
237.03 0.723 3.5 0.477 1.32 0.0877 0.495 -- 0.109 20.5 60.62 25 9.55 2.04
211.31 0.677 3.59 0.617 1.36 45.3 -- 101 0.116 20.5 59.87 78 8.97 0.995
234.11 0.713 3.51 0.496 1.37 0.466 -- -- 0.0998 20.6 123.8 179 8.23 0.792
313.84 0.825 3.56 0.614 -- 45.6 -- 103 0.0996 -- 59.63 66 8.92 1.03
237.03 0.722 3.5 0.476 1.32 -- 0.499 -- 0.109 20.5 -- -- -- --
237.83 0.722 3.5 0.46 1.32 -- -- -- 0.109 20.5 -- -- -- --
298.54 0.805 3.55 0.476 -- -0.778 -- -- 0.0857 -- 194.2 338 8.28 0.167
239.25 0.72 3.52 -- 1.43 0.429 -- -- 0.0283 20.6 202.7 156 8.28 0.75
334.76 0.855 3.47 0.454 -- -- -- -- 0.0959 -- -- -- -- --
243.41 0.73 3.51 -- 1.31 -- -- -- 0.0575 20.5 -- -- -- --
293.5 0.798 3.49 -- -- -0.81 -- -- -0.0288 -- 222.7 380 7.26 0.85
340.2 0.861 3.48 -- -- -- -- -- 0.0456 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 209.81 humidity 60.0 90 < th dose dependent rect. 9 1
16 210.49 humidity 60.0 90 < th dose independent rect. 9 1
31 219.19 wind 3.0 720 > th dose independent rect. 11 1
32 219.90 atmosphere 995.0 90 > th dose dependent rect. 23 11
34 220.44 temperature 20.0 90 > th dose dependent rect. 22 1
35 220.55 temperature 20.0 10 > th dose dependent rect. 22 2
37 220.66 wind 1.0 720 > th dose dependent rect. 11 1
40 220.84 temperature 25.0 30 > th dose independent rect. 22 2
43 220.95 atmosphere 995.0 720 > th dose dependent rect. 23 1
51 221.48 atmosphere 1015.0 10 < th dose dependent rect. 22 8
52 221.49 humidity 80.0 270 > th dose dependent rect. 6 1
55 221.78 temperature 10.0 10 > th dose dependent rect. 22 8
62 222.11 atmosphere 1000.0 10 > th dose independent rect. 6 5
66 222.18 precipitation 0.1 1440 < th dose independent rect. 23 1
67 222.18 precipitation 0.1 1440 < th dose dependent rect. 23 1
70 222.27 radiation 1.0 14400 < th dose dependent rect. 23 1
72 222.30 wind 1.0 270 > th dose independent rect. 8 20
73 222.33 wind 3.0 10 < th dose independent rect. 6 5
75 222.46 atmosphere 1000.0 270 > th dose independent rect. 6 1
76 222.48 temperature 30.0 10 < th dose independent rect. 6 5
78 222.53 humidity 80.0 270 > th dose independent rect. 6 1
79 222.53 wind 9.0 30 < th dose independent rect. 23 23
80 222.57 radiation 40.0 43200 < th dose dependent rect. 23 1
89 222.77 temperature 25.0 30 > th dose independent rect. 22 6
91 222.78 humidity 80.0 30 > th dose dependent rect. 22 1
92 222.80 humidity 80.0 30 > th dose independent rect. 22 1
95 222.82 wind 3.0 30 < th dose independent rect. 22 1
98 222.86 wind 3.0 30 < th dose dependent rect. 22 1
100 222.86 temperature 25.0 10 > th dose dependent rect. 22 6
101 222.87 wind 9.0 1440 < th dose independent rect. 23 1
102 222.87 temperature 10.0 1440 > th dose independent rect. 23 1
105 222.87 temperature 30.0 1440 < th dose independent rect. 23 1
109 222.87 humidity 50.0 1440 > th dose independent rect. 23 1
119 222.87 atmosphere 995.0 1440 > th dose independent rect. 23 1
120 222.87 radiation 1.0 1440 < th dose independent rect. 23 1
140 222.87 temperature 10.0 1440 > th dose independent rect. 24 23
143 222.87 radiation 1.0 1440 < th dose dependent rect. 23 1
150 222.89 temperature 30.0 30 < th dose dependent rect. 22 1
151 222.90 wind 1.0 30 > th dose independent rect. 22 1
157 222.91 atmosphere 1005.0 30 > th dose dependent rect. 22 1
175 222.94 atmosphere 995.0 30 > th dose dependent rect. 22 1
179 222.96 temperature 10.0 30 > th dose independent rect. 22 1
182 222.96 temperature 30.0 30 < th dose independent rect. 22 1
183 222.96 humidity 50.0 30 > th dose independent rect. 22 1
186 222.96 atmosphere 995.0 30 > th dose independent rect. 22 1
188 222.96 atmosphere 1010.0 30 < th dose independent rect. 22 1
190 222.96 radiation 1.0 30 < th dose independent rect. 22 1
195 222.96 precipitation 0.1 30 < th dose independent rect. 22 1
196 222.96 temperature 10.0 30 > th dose independent rect. 23 23
197 222.96 radiation 1.0 30 < th dose dependent rect. 22 1
202 222.96 precipitation 0.1 30 < th dose dependent rect. 22 1
208 223.03 humidity 90.0 30 < th dose independent rect. 22 1
213 223.06 atmosphere 1015.0 30 < th dose dependent rect. 22 1
220 223.12 atmosphere 1015.0 10 < th dose independent rect. 11 19
225 223.14 wind 5.0 720 < th dose independent rect. 24 5
227 223.15 wind 7.0 10 < th dose dependent rect. 6 5
234 223.20 wind 1.0 30 > th dose dependent rect. 22 1
247 223.29 atmosphere 1000.0 30 > th dose independent rect. 23 23
248 223.29 humidity 90.0 30 < th dose dependent rect. 22 1
299 223.54 wind 1.0 10 > th dose independent rect. 4 7
302 223.57 radiation 40.0 10 < th dose dependent rect. 6 5
305 223.60 wind 1.0 270 > th dose independent rect. 5 2
312 223.67 humidity 50.0 10 > th dose dependent rect. 6 5
317 223.74 wind 1.0 270 > th dose independent rect. 4 4
324 223.80 atmosphere 1000.0 30 > th dose independent rect. 23 12
331 223.87 wind 1.0 90 > th dose independent rect. 10 13
355 224.07 wind 1.0 10 > th dose independent rect. 6 5
356 224.07 temperature 10.0 10 > th dose independent rect. 6 5
358 224.07 humidity 50.0 10 > th dose independent rect. 6 5
360 224.07 atmosphere 1015.0 10 < th dose independent rect. 6 5
361 224.07 temperature 10.0 10 > th dose independent rect. 11 19
362 224.08 precipitation 0.1 10 < th dose independent rect. 6 5
364 224.08 precipitation 0.1 10 < th dose dependent rect. 6 5
365 224.09 radiation 20.0 270 < th dose independent rect. 6 1
369 224.11 precipitation 0.1 30 < th dose independent rect. 23 23
371 224.11 precipitation 0.1 30 < th dose dependent rect. 23 23
394 224.23 atmosphere 1015.0 10 < th dose independent rect. 22 8
398 224.26 humidity 50.0 10 > th dose independent rect. 11 19
400 224.28 temperature 10.0 1440 > th dose independent rect. 7 5
403 224.28 atmosphere 995.0 1440 > th dose independent rect. 7 5
404 224.28 temperature 10.0 1440 > th dose independent rect. 12 19
410 224.31 atmosphere 995.0 10 > th dose dependent rect. 6 5
421 224.41 precipitation 0.1 30 < th dose independent rect. 11 19
422 224.41 radiation 40.0 270 < th dose dependent rect. 6 1
423 224.41 precipitation 0.1 30 < th dose dependent rect. 11 19
424 224.43 wind 3.0 270 < th dose independent rect. 6 1
427 224.45 radiation 30.0 10 < th dose independent rect. 6 5
428 224.46 wind 7.0 270 < th dose independent rect. 6 1
430 224.46 temperature 10.0 270 > th dose independent rect. 6 1
432 224.46 temperature 30.0 270 < th dose independent rect. 6 1
433 224.46 humidity 50.0 270 > th dose independent rect. 6 1
436 224.46 atmosphere 1015.0 270 < th dose independent rect. 6 1
438 224.46 temperature 10.0 270 > th dose independent rect. 7 23
440 224.47 precipitation 0.1 270 < th dose independent rect. 6 1
441 224.47 radiation 1.0 10 > th dose independent rect. 6 5
442 224.47 precipitation 0.1 270 < th dose dependent rect. 6 1
444 224.49 atmosphere 1015.0 270 < th dose independent rect. 8 20
446 224.52 wind 9.0 10 < th dose independent rect. 11 19
450 224.54 wind 9.0 270 < th dose dependent rect. 6 1
458 224.57 atmosphere 995.0 270 > th dose dependent rect. 5 2
471 224.59 humidity 50.0 720 > th dose dependent rect. 23 1
489 224.70 atmosphere 1015.0 270 < th dose independent rect. 7 22
503 224.78 atmosphere 995.0 10 > th dose dependent rect. 14 21
530 224.95 temperature 30.0 30 < th dose independent rect. 23 12
539 225.02 precipitation 0.1 270 < th dose independent rect. 7 22
540 225.02 atmosphere 995.0 270 > th dose dependent rect. 4 4
541 225.02 temperature 10.0 270 > th dose dependent rect. 18 10
542 225.02 precipitation 0.1 270 < th dose dependent rect. 7 22
552 225.07 wind 5.0 10 < th dose independent rect. 23 12
562 225.12 atmosphere 995.0 10 > th dose independent rect. 11 19
566 225.13 temperature 10.0 10 > th dose dependent rect. 6 5
631 225.40 atmosphere 995.0 30 > th dose dependent rect. 19 16
658 225.45 wind 9.0 270 < th dose independent rect. 7 22
665 225.48 radiation 30.0 270 < th dose independent rect. 4 4
667 225.48 temperature 10.0 1440 > th dose independent rect. 5 7
670 225.48 atmosphere 995.0 1440 > th dose independent rect. 5 7
671 225.48 temperature 10.0 1440 > th dose independent rect. 12 17
674 225.48 humidity 90.0 1440 > th dose dependent rect. 6 1
681 225.50 wind 1.0 270 > th dose independent rect. 18 10
683 225.50 radiation 10.0 90 < th dose dependent rect. 21 9
686 225.52 radiation 10.0 10 < th dose independent rect. 22 8
687 225.52 humidity 80.0 30 > th dose independent rect. 21 9
700 225.56 wind 9.0 10 < th dose independent rect. 6 16
701 225.56 temperature 10.0 270 > th dose independent rect. 8 20
707 225.59 precipitation 0.1 270 < th dose independent rect. 24 13
708 225.59 temperature 10.0 270 > th dose dependent rect. 5 2
712 225.59 precipitation 0.1 270 < th dose dependent rect. 24 13
723 225.61 atmosphere 1015.0 90 < th dose independent rect. 10 13
729 225.63 radiation 40.0 30 < th dose independent rect. 23 23
745 225.70 precipitation 0.1 270 < th dose independent rect. 8 20
747 225.70 precipitation 0.1 270 < th dose dependent rect. 8 20
759 225.74 wind 9.0 90 < th dose independent rect. 13 22
760 225.76 wind 1.0 90 > th dose independent rect. 11 2
764 225.76 precipitation 0.1 10 < th dose independent rect. 6 16
765 225.76 precipitation 0.1 10 < th dose dependent rect. 6 16
772 225.79 radiation 1.0 720 > th dose independent rect. 11 1
789 225.81 temperature 10.0 720 > th dose independent rect. 11 1
790 225.81 atmosphere 995.0 720 > th dose independent rect. 11 1
791 225.81 atmosphere 1015.0 720 < th dose independent rect. 11 1
792 225.81 precipitation 0.1 720 < th dose independent rect. 11 1
794 225.81 temperature 10.0 720 > th dose independent rect. 12 23
796 225.81 precipitation 0.1 720 < th dose dependent rect. 11 1
804 225.84 radiation 30.0 10 < th dose dependent rect. 22 8
806 225.85 temperature 10.0 1440 > th dose independent rect. 12 12
809 225.85 temperature 10.0 1440 > th dose independent rect. 24 12
812 225.85 atmosphere 995.0 1440 > th dose independent rect. 24 12
815 225.86 radiation 20.0 10 < th dose independent rect. 6 16
875 225.99 radiation 30.0 10 < th dose dependent rect. 6 16
896 226.01 temperature 25.0 90 > th dose independent rect. 8 1
899 226.01 precipitation 0.1 30 < th dose independent rect. 11 12
901 226.01 precipitation 0.1 30 < th dose dependent rect. 11 12
902 226.01 atmosphere 995.0 10 > th dose dependent rect. 17 18
906 226.03 humidity 50.0 90 > th dose independent rect. 11 2
913 226.03 wind 7.0 10 < th dose independent rect. 22 8
922 226.04 temperature 10.0 10 > th dose independent rect. 22 8
923 226.04 temperature 30.0 10 < th dose independent rect. 22 8
924 226.04 humidity 50.0 10 > th dose independent rect. 22 8
927 226.04 atmosphere 995.0 10 > th dose independent rect. 22 8
932 226.04 wind 9.0 270 < th dose independent rect. 4 14
933 226.04 temperature 10.0 10 > th dose independent rect. 6 16
935 226.04 atmosphere 1015.0 10 < th dose independent rect. 6 16
936 226.04 atmosphere 995.0 270 > th dose independent rect. 8 20
945 226.07 temperature 15.0 90 > th dose independent rect. 11 2
947 226.07 wind 9.0 270 < th dose independent rect. 8 20
953 226.08 temperature 10.0 30 > th dose independent rect. 11 12
955 226.08 temperature 10.0 30 > th dose independent rect. 23 12
956 226.08 humidity 50.0 30 > th dose independent rect. 23 12
963 226.09 atmosphere 1015.0 270 < th dose independent rect. 18 10
967 226.09 atmosphere 995.0 270 > th dose independent rect. 7 22
970 226.11 wind 9.0 90 < th dose independent rect. 11 2
972 226.12 wind 9.0 720 < th dose independent rect. 11 1
974 226.12 temperature 30.0 270 < th dose dependent rect. 6 1
983 226.14 atmosphere 995.0 90 > th dose independent rect. 11 2
984 226.14 atmosphere 1015.0 90 < th dose independent rect. 11 2
985 226.14 precipitation 0.1 90 < th dose independent rect. 11 2
986 226.14 temperature 10.0 90 > th dose independent rect. 13 22
987 226.14 precipitation 0.1 90 < th dose dependent rect. 11 2
991 226.16 temperature 10.0 90 > th dose dependent rect. 11 2
998 226.17 atmosphere 995.0 90 > th dose independent rect. 13 22