BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os12g0129300 Os12g0129300|AK062739
         (89 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G26120.1  | chr5:9121835-9125399 REVERSE LENGTH=675             69   4e-13
AT3G10740.1  | chr3:3361031-3364573 REVERSE LENGTH=679             69   5e-13

>AT5G26120.1 | chr5:9121835-9125399 REVERSE LENGTH=675
          Length = 674

 Score = 69.3 bits (168), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 31/41 (75%), Positives = 36/41 (87%)

Query: 36 VEVDASWEVSRKIPDTLFGLFFEEINHAGAGGIWAELVSNR 76
          ++VDAS    R IP+TLFG+FFEEINHAGAGG+WAELVSNR
Sbjct: 42 LQVDASNVTRRPIPETLFGIFFEEINHAGAGGLWAELVSNR 82



>AT3G10740.1 | chr3:3361031-3364573 REVERSE LENGTH=679
          Length = 678

 Score = 68.9 bits (167), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 40/47 (85%), Gaps = 1/47 (2%)

Query: 31 PQTAL-VEVDASWEVSRKIPDTLFGLFFEEINHAGAGGIWAELVSNR 76
          P+ A+ ++VDAS    R IP+TLFG+FFEEINHAGAGG+WAELVSNR
Sbjct: 37 PKPAVTLQVDASNGGGRPIPETLFGIFFEEINHAGAGGLWAELVSNR 83



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.130    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,574,855
Number of extensions: 44169
Number of successful extensions: 76
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 2
Length of query: 89
Length of database: 11,106,569
Length adjustment: 60
Effective length of query: 29
Effective length of database: 9,461,609
Effective search space: 274386661
Effective search space used: 274386661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)