Os12g0125400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Homoserine dehydrogenase-like protein.
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Os12g0125400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Homoserine dehydrogenase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.24 | 0.206 | 12.4 | -1.45 | 0.216 | 0.571 | -0.153 | -0.296 | -0.292 | 22.1 | 26.48 | 699 | -- | -- |
| 19.3 | 0.205 | 12.4 | -1.38 | 0.222 | 0.553 | -0.209 | -- | -0.265 | 22.1 | 26.55 | 688 | -- | -- |
| 19.18 | 0.204 | 12.4 | -1.4 | 0.234 | 0.551 | -- | -0.153 | -0.279 | 23 | 26.46 | 608 | -- | -- |
| 19.24 | 0.204 | 12.4 | -1.37 | 0.247 | 0.554 | -- | -- | -0.274 | 23.3 | 26.45 | 592 | -- | -- |
| 21.43 | 0.216 | 12.5 | -1.52 | -- | 0.703 | -- | -0.491 | -0.349 | -- | 26.3 | 691 | -- | -- |
| 28.6 | 0.251 | 12.4 | -1.2 | 0.492 | -- | -0.115 | -- | -0.139 | 20.9 | -- | -- | -- | -- |
| 28.65 | 0.251 | 12.4 | -1.2 | 0.492 | -- | -- | -- | -0.139 | 20.9 | -- | -- | -- | -- |
| 21.7 | 0.217 | 12.4 | -1.41 | -- | 0.676 | -- | -- | -0.312 | -- | 26.3 | 698 | -- | -- |
| 65.54 | 0.377 | 12.4 | -- | 0.302 | 0.328 | -- | -- | -0.109 | 22.8 | 26.6 | 533 | -- | -- |
| 42.49 | 0.305 | 12.4 | -1.2 | -- | -- | -- | -- | -0.143 | -- | -- | -- | -- | -- |
| 66.6 | 0.382 | 12.4 | -- | 0.495 | -- | -- | -- | -0.00572 | 20.7 | -- | -- | -- | -- |
| 70.87 | 0.392 | 12.4 | -- | -- | 0.438 | -- | -- | -0.0898 | -- | 26.6 | 632 | -- | -- |
| 80.47 | 0.419 | 12.4 | -- | -- | -- | -- | -- | -0.00965 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 8 |
| 7 | 20.45 | temperature | 25 | 720 | > th | dose independent | rect. | 10 | 11 |
| 36 | 20.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 11 |
| 37 | 20.86 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 13 |
| 38 | 20.87 | temperature | 30 | 720 | < th | dose dependent | sin | 21 | NA |
| 41 | 20.88 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 12 |
| 50 | 20.94 | temperature | 25 | 720 | > th | dose independent | sin | 21 | NA |
| 97 | 21.09 | temperature | 25 | 720 | < th | dose independent | sin | 21 | NA |
| 114 | 21.14 | temperature | 25 | 720 | > th | dose dependent | sin | 19 | NA |
| 349 | 21.65 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 355 | 21.65 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 367 | 21.68 | temperature | 10 | 720 | > th | dose dependent | sin | 21 | NA |
| 945 | 22.80 | temperature | 10 | 10 | > th | dose dependent | sin | 15 | NA |