BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0125400 Os12g0125400|AK062006
(384 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G21060.2 | chr5:7149153-7152745 REVERSE LENGTH=379 420 e-118
AT1G31230.1 | chr1:11158744-11163055 REVERSE LENGTH=912 162 3e-40
AT4G19710.2 | chr4:10725229-10729536 FORWARD LENGTH=917 150 8e-37
>AT5G21060.2 | chr5:7149153-7152745 REVERSE LENGTH=379
Length = 378
Score = 420 bits (1079), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/359 (60%), Positives = 261/359 (72%), Gaps = 2/359 (0%)
Query: 25 RHILSCRPLHANQGVAIRVLGVADSSSLLVADDLHSNGFXXXXXXXXXXXKSAGSPLSSL 84
+HI+SCR LHA GV IRV+GV DS SL+ D+ KS GS LS L
Sbjct: 20 QHIVSCRSLHAKMGVHIRVIGVCDSKSLVAPMDVLKEELNDELLSEVCLIKSTGSALSKL 79
Query: 85 --LSRGQCQLFNNPEARRKVIDTASVLGKTTGLVLVDCSATYDTVGMLKDAVDRGCCVVL 142
L +G ++ ++ E + + A +LGK+TGL +VDCSA+ +T+ +L AVD GCC+VL
Sbjct: 80 GALEKGGYRVVHDSELSTETEEIAKLLGKSTGLAVVDCSASMETIEILMKAVDLGCCIVL 139
Query: 143 ANKKPLTCAYEDFEKLVSNFRRMRFESTVGAGLPVIASVTRIIASGDPVSRIVGSLSGTL 202
ANKKP+T E ++KL + R +R ESTVGAGLPVIAS+ RII+SGDPV RIVGSLSGTL
Sbjct: 140 ANKKPVTSTLEHYDKLALHPRFIRHESTVGAGLPVIASLNRIISSGDPVHRIVGSLSGTL 199
Query: 203 GYVMSELEDGKRFSEVVKTAKSLGYTEPDPRDDLSGMDVARKALILARLLGQRISMENIN 262
GYVMSELEDGK S+VV+ AK LGYTEPDPRDDL GMDVARK LILARLLG+RI M++I
Sbjct: 200 GYVMSELEDGKPLSQVVQAAKKLGYTEPDPRDDLGGMDVARKGLILARLLGKRIIMDSIK 259
Query: 263 VESLYPSEFGPDAMSTKDFLESGLVQLDKSIEERVKAASLKGNVLRYVCKIESTGCQVGL 322
+ESLYP E GP MS DFL +G+V+LD++IEERVK AS KG VLRYVC IE + QVG+
Sbjct: 260 IESLYPEEMGPGLMSVDDFLHNGIVKLDQNIEERVKKASSKGCVLRYVCVIEGSSVQVGI 319
Query: 323 EELPKNSALGRLRGSDNVVEIYSRCYESAPLVIQXXXXXXXXXXXXVLADILDLQDLFH 381
E+ K+S LGRLRGSDN+VEIYSRCY+ PLVIQ VLADI+DLQDLFH
Sbjct: 320 REVSKDSPLGRLRGSDNIVEIYSRCYKEQPLVIQGAGAGNDTTAAGVLADIIDLQDLFH 378
>AT1G31230.1 | chr1:11158744-11163055 REVERSE LENGTH=912
Length = 911
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 150/267 (56%), Gaps = 8/267 (2%)
Query: 116 VLVDCSATYDTVGMLKDAVDRGCCVVLANKKPLTCAYEDFEKLV----SNFRRMRFESTV 171
V+VDC+A D D + RG VV NKK + + + K+ ++ +E+TV
Sbjct: 639 VMVDCTADADIASCYYDWLLRGIHVVTPNKKANSGPLDQYLKIRDLQRKSYTHYFYEATV 698
Query: 172 GAGLPVIASVTRIIASGDPVSRIVGSLSGTLGYVMSELEDGKRFSEVVKTAKSLGYTEPD 231
GAGLP+I+++ ++ +GD + RI G SGTL Y+ + + FSEVV AK G+TEPD
Sbjct: 699 GAGLPIISTLRGLLETGDKILRIEGIFSGTLSYLFNNFVGTRSFSEVVAEAKQAGFTEPD 758
Query: 232 PRDDLSGMDVARKALILARLLGQRISMENINVESLYPSEFGPDAMSTKDFLESGLVQLDK 291
PRDDLSG DVARK ILAR G ++ +E + V++L P A S ++F+E L Q D+
Sbjct: 759 PRDDLSGTDVARKVTILARESGLKLDLEGLPVQNLVPKPLQACA-SAEEFMEK-LPQFDE 816
Query: 292 SIEERVKAASLKGNVLRYVCKIESTGCQ--VGLEELPKNSALGRLRGSDNVVEIYSRCYE 349
+ ++ + A G VLRYV +++ + V L+ K+ +L G+DN++ ++ Y+
Sbjct: 817 ELSKQREEAEAAGEVLRYVGVVDAVEKKGTVELKRYKKDHPFAQLSGADNIIAFTTKRYK 876
Query: 350 SAPLVIQXXXXXXXXXXXXVLADILDL 376
PL+++ + +DIL L
Sbjct: 877 EQPLIVRGPGAGAQVTAGGIFSDILRL 903
>AT4G19710.2 | chr4:10725229-10729536 FORWARD LENGTH=917
Length = 916
Score = 150 bits (380), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 143/267 (53%), Gaps = 8/267 (2%)
Query: 116 VLVDCSATYDTVGMLKDAVDRGCCVVLANKKPLTCAYEDFEKLV----SNFRRMRFESTV 171
V+VDC+A D + +G V+ NKK + + + KL ++ +E+TV
Sbjct: 644 VVVDCTADSAIASRYYDWLRKGIHVITPNKKANSGPLDQYLKLRDLQRKSYTHYFYEATV 703
Query: 172 GAGLPVIASVTRIIASGDPVSRIVGSLSGTLGYVMSELEDGKRFSEVVKTAKSLGYTEPD 231
GAGLP+I+++ ++ +GD + RI G SGTL Y+ + + FSEVV AK+ G+TEPD
Sbjct: 704 GAGLPIISTLRGLLETGDKILRIEGICSGTLSYLFNNFVGDRSFSEVVTEAKNAGFTEPD 763
Query: 232 PRDDLSGMDVARKALILARLLGQRISMENINVESLYPSEFGPDAMSTKDFLESGLVQLDK 291
PRDDLSG DVARK +ILAR G ++ + ++ + SL P S ++F+E L Q D
Sbjct: 764 PRDDLSGTDVARKVIILARESGLKLDLADLPIRSLVPEPL-KGCTSVEEFMEK-LPQYDG 821
Query: 292 SIEERVKAASLKGNVLRYVCKIESTGCQ--VGLEELPKNSALGRLRGSDNVVEIYSRCYE 349
+ + A G VLRYV +++ + V L K +L GSDN++ + Y+
Sbjct: 822 DLAKERLDAENSGEVLRYVGVVDAVNQKGTVELRRYKKEHPFAQLAGSDNIIAFTTTRYK 881
Query: 350 SAPLVIQXXXXXXXXXXXXVLADILDL 376
PL+++ + +DIL L
Sbjct: 882 DHPLIVRGPGAGAQVTAGGIFSDILRL 908
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,903,720
Number of extensions: 265316
Number of successful extensions: 754
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 748
Number of HSP's successfully gapped: 3
Length of query: 384
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 284
Effective length of database: 8,364,969
Effective search space: 2375651196
Effective search space used: 2375651196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)