Os11g0603000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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Os11g0603000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Basic helix-loop-helix dimerisation region bHLH domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 133.98 | 0.544 | 2.8 | -0.219 | 0.0657 | 8.87 | -0.24 | -22.3 | -0.0337 | 1.69 | 2 | 179 | -- | -- |
| 146.84 | 0.564 | 2.79 | 0.062 | 0.242 | 6.07 | 0.594 | -- | -0.0268 | 0.731 | 1.998 | 175 | -- | -- |
| 134.19 | 0.54 | 2.8 | -0.21 | 0.0675 | 8.85 | -- | -22.3 | -0.0323 | 0.456 | 1.974 | 184 | -- | -- |
| 134.69 | 0.541 | 2.77 | -0.0839 | 0.0636 | 3.86 | -- | -- | -0.0312 | 0.687 | 1.658 | 189 | -- | -- |
| 134.47 | 0.54 | 2.8 | -0.209 | -- | 8.89 | -- | -22.4 | -0.0309 | -- | 1.971 | 183 | -- | -- |
| 167.2 | 0.606 | 2.78 | 0.0144 | 0.105 | -- | 0.533 | -- | -0.0498 | 18.9 | -- | -- | -- | -- |
| 167.6 | 0.606 | 2.78 | 0.00179 | 0.126 | -- | -- | -- | -0.0499 | 21.3 | -- | -- | -- | -- |
| 134.94 | 0.541 | 2.77 | -0.0816 | -- | 3.87 | -- | -- | -0.0299 | -- | 1.684 | 196 | -- | -- |
| 134.87 | 0.541 | 2.77 | -- | 0.0625 | 3.84 | -- | -- | -0.0221 | 0.589 | 1.691 | 204 | -- | -- |
| 168.54 | 0.607 | 2.77 | 0.00239 | -- | -- | -- | -- | -0.0505 | -- | -- | -- | -- | -- |
| 167.6 | 0.606 | 2.78 | -- | 0.126 | -- | -- | -- | -0.0501 | 21.3 | -- | -- | -- | -- |
| 135.12 | 0.541 | 2.77 | -- | -- | 3.84 | -- | -- | -0.021 | -- | 1.723 | 197 | -- | -- |
| 168.54 | 0.606 | 2.77 | -- | -- | -- | -- | -- | -0.0507 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 133.60 | precipitation | 1e-01 | 270 | > th | dose dependent | rect. | 16 | 3 |
| 3 | 133.96 | precipitation | 1e-01 | 270 | > th | dose independent | rect. | 16 | 1 |
| 4 | 133.96 | precipitation | 1e-01 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 8 | 134.56 | precipitation | 1e-01 | 270 | > th | dose independent | rect. | 16 | 3 |
| 19 | 136.26 | atmosphere | 1e+03 | 270 | < th | dose independent | rect. | 16 | 1 |
| 20 | 136.33 | atmosphere | 1e+03 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 38 | 138.01 | precipitation | 1e-01 | 270 | > th | dose dependent | rect. | 5 | 13 |
| 78 | 141.81 | precipitation | 1e-01 | 270 | > th | dose dependent | rect. | 16 | 12 |
| 85 | 142.06 | precipitation | 1e-01 | 270 | > th | dose dependent | sin | 19 | NA |
| 96 | 142.36 | precipitation | 1e-01 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 165 | 144.00 | precipitation | 1e-01 | 270 | > th | dose independent | rect. | 5 | 13 |
| 232 | 146.08 | precipitation | 1e-01 | 270 | > th | dose dependent | rect. | 8 | 20 |
| 277 | 146.57 | precipitation | 1e-01 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 310 | 146.89 | precipitation | 1e-01 | 10 | > th | dose independent | rect. | 17 | 6 |
| 320 | 146.89 | precipitation | 1e-01 | 10 | > th | dose dependent | rect. | 17 | 6 |
| 330 | 146.91 | precipitation | 1e-01 | 10 | > th | dose independent | rect. | 17 | 3 |
| 380 | 146.91 | precipitation | 1e-01 | 10 | > th | dose dependent | rect. | 17 | 3 |
| 470 | 147.36 | precipitation | 1e-01 | 270 | > th | dose dependent | no | NA | NA |
| 542 | 148.88 | precipitation | 1e-01 | 10 | < th | dose independent | sin | 20 | NA |
| 543 | 148.88 | precipitation | 1e-01 | 10 | < th | dose dependent | sin | 20 | NA |
| 546 | 148.89 | precipitation | 1e-01 | 10 | > th | dose independent | sin | 20 | NA |
| 547 | 148.89 | precipitation | 1e-01 | 10 | > th | dose dependent | sin | 20 | NA |
| 562 | 148.98 | precipitation | 1e-01 | 270 | < th | dose independent | sin | 18 | NA |
| 568 | 148.98 | precipitation | 1e-01 | 270 | < th | dose dependent | sin | 18 | NA |
| 578 | 149.05 | precipitation | 1e-01 | 270 | > th | dose independent | sin | 18 | NA |
| 590 | 149.19 | precipitation | 1e-01 | 30 | > th | dose independent | sin | 22 | NA |
| 600 | 149.29 | precipitation | 1e-01 | 30 | < th | dose independent | sin | 22 | NA |
| 601 | 149.29 | precipitation | 1e-01 | 30 | < th | dose dependent | sin | 22 | NA |
| 640 | 149.54 | precipitation | 1e-01 | 270 | < th | dose independent | sin | 20 | NA |
| 641 | 149.54 | precipitation | 1e-01 | 270 | < th | dose dependent | sin | 20 | NA |
| 831 | 150.76 | precipitation | 1e-01 | 10 | > th | dose independent | rect. | 17 | 1 |
| 862 | 150.76 | precipitation | 1e-01 | 10 | > th | dose dependent | rect. | 17 | 1 |