BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0603000 Os11g0603000|AK111303
         (101 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0603000  Basic helix-loop-helix dimerisation region bHL...   143   3e-35

>Os11g0603000 Basic helix-loop-helix dimerisation region bHLH domain containing
           protein
          Length = 101

 Score =  143 bits (361), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/89 (83%), Positives = 74/89 (83%)

Query: 13  LAAAPPPTDEQMAELISKLQAVLPTRGGEANAKQASSAEVLQEACRYIRRLHRXXXXXXX 72
           LAAAPPPTDEQMAELISKLQAVLPTRGGEANAKQASSAEVLQEACRYIRRLHR       
Sbjct: 13  LAAAPPPTDEQMAELISKLQAVLPTRGGEANAKQASSAEVLQEACRYIRRLHREADALSE 72

Query: 73  XXXXXXXXQPSDLAINGADVPDLIRSLLM 101
                   QPSDLAINGADVPDLIRSLLM
Sbjct: 73  RLAELLLLQPSDLAINGADVPDLIRSLLM 101



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.130    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,685,003
Number of extensions: 72431
Number of successful extensions: 257
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 1
Length of query: 101
Length of database: 17,035,801
Length adjustment: 69
Effective length of query: 32
Effective length of database: 13,433,035
Effective search space: 429857120
Effective search space used: 429857120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 149 (62.0 bits)