BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0603000 Os11g0603000|AK111303
         (101 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G39860.1  | chr5:15957689-15958303 FORWARD LENGTH=93            53   3e-08
AT3G28857.1  | chr3:10855781-10856313 REVERSE LENGTH=93            50   2e-07

>AT5G39860.1 | chr5:15957689-15958303 FORWARD LENGTH=93
          Length = 92

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 35/50 (70%)

Query: 16 APPPTDEQMAELISKLQAVLPTRGGEANAKQASSAEVLQEACRYIRRLHR 65
          AP  +D QM +L+SKL+ +LP  G    + +AS+++VLQE C YIR L+R
Sbjct: 12 APRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLNR 61



>AT3G28857.1 | chr3:10855781-10856313 REVERSE LENGTH=93
          Length = 92

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 34/52 (65%)

Query: 14 AAAPPPTDEQMAELISKLQAVLPTRGGEANAKQASSAEVLQEACRYIRRLHR 65
          + A   +D+QM +L+SKL+  LP       + + S+++VLQE C YIR+LHR
Sbjct: 10 SNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHR 61



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.130    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,430,607
Number of extensions: 31991
Number of successful extensions: 89
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 2
Length of query: 101
Length of database: 11,106,569
Length adjustment: 71
Effective length of query: 30
Effective length of database: 9,160,033
Effective search space: 274800990
Effective search space used: 274800990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)