Os11g0528200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0528200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 188.71 | 0.645 | 5.8 | 0.96 | 0.975 | 1.24 | 0.74 | 0.605 | 0.217 | 12 | 20.07 | 630 | -- | -- |
| 189.69 | 0.641 | 5.81 | 0.878 | 0.965 | 1.16 | 0.617 | -- | 0.205 | 12 | 20 | 621 | -- | -- |
| 190.68 | 0.643 | 5.8 | 0.978 | 0.945 | 1.2 | -- | 0.479 | 0.2 | 11.8 | 20.2 | 611 | -- | -- |
| 190.82 | 0.643 | 5.81 | 0.905 | 0.957 | 1.14 | -- | -- | 0.19 | 11.9 | 20.32 | 610 | -- | -- |
| 236.08 | 0.72 | 5.82 | 1.01 | -- | 0.9 | -- | -0.188 | 0.24 | -- | 20.2 | 1557 | -- | -- |
| 224.87 | 0.703 | 5.77 | 1.28 | 0.86 | -- | 0.753 | -- | 0.426 | 12.6 | -- | -- | -- | -- |
| 227.2 | 0.706 | 5.76 | 1.31 | 0.858 | -- | -- | -- | 0.428 | 12.4 | -- | -- | -- | -- |
| 232.84 | 0.711 | 5.81 | 0.967 | -- | 1.04 | -- | -- | 0.236 | -- | 20.43 | 160 | -- | -- |
| 205.85 | 0.668 | 5.85 | -- | 0.991 | 1.6 | -- | -- | 0.0237 | 12.4 | 20.1 | 1164 | -- | -- |
| 273.43 | 0.773 | 5.78 | 1.28 | -- | -- | -- | -- | 0.415 | -- | -- | -- | -- | -- |
| 272.12 | 0.772 | 5.8 | -- | 0.839 | -- | -- | -- | 0.283 | 12.3 | -- | -- | -- | -- |
| 252.87 | 0.741 | 5.87 | -- | -- | 1.93 | -- | -- | 0.0337 | -- | 19.1 | 1631 | -- | -- |
| 316.41 | 0.83 | 5.81 | -- | -- | -- | -- | -- | 0.273 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 183.25 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 19 |
| 3 | 183.89 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 21 |
| 11 | 185.07 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 12 |
| 25 | 186.42 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 20 |
| 43 | 187.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 49 | 187.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 66 | 188.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 84 | 188.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 8 |
| 89 | 188.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 103 | 188.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 17 |
| 115 | 188.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 6 |
| 139 | 188.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 21 |
| 181 | 189.18 | temperature | 20 | 1440 | > th | dose independent | sin | 14 | NA |
| 238 | 189.40 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 250 | 189.45 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 259 | 189.49 | temperature | 20 | 1440 | < th | dose independent | sin | 14 | NA |
| 279 | 189.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 304 | 189.61 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 317 | 189.65 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 23 |
| 351 | 189.78 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 23 |
| 353 | 189.79 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 365 | 189.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 373 | 189.84 | temperature | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 418 | 189.97 | temperature | 20 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 617 | 190.60 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 13 |
| 647 | 190.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 683 | 190.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 717 | 191.01 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 725 | 191.04 | temperature | 20 | 720 | > th | dose independent | sin | 23 | NA |
| 748 | 191.12 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 2 |
| 776 | 191.24 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 21 |
| 871 | 191.71 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 9 |
| 997 | 192.42 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 1000 | 192.43 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 4 |