BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0528200 Os11g0528200|AK071810
         (262 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13390.1  | chr5:4292809-4296572 FORWARD LENGTH=1124           272   1e-73

>AT5G13390.1 | chr5:4292809-4296572 FORWARD LENGTH=1124
          Length = 1123

 Score =  272 bits (696), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 134/266 (50%), Positives = 185/266 (69%), Gaps = 4/266 (1%)

Query: 1    MLAIEGARMSLLGLYAAIFMIIALEIKFELALLLREKAADK-GVTHGPPGRSSAFPPKXX 59
            MLAIEGAR SLLGLYAAIFM+IAL IKFEL  LLREK +++ G +    G    FP +  
Sbjct: 858  MLAIEGARTSLLGLYAAIFMLIALLIKFELTSLLREKFSERSGQSKTQGGARGIFPTRMR 917

Query: 60   XXXXXXXXXXPTFTIKRLAAE-AAWMPAIGNFSTVLCFIICLILNVTLTGGSNRXXXXXX 118
                       +F +++++ E AAWMP++GN +T++CF ICLILN+ L+GGS++      
Sbjct: 918  LMQQRRATSIQSFAVEKMSEEGAAWMPSVGNVATIMCFAICLILNIHLSGGSSQAIFFLA 977

Query: 119  XXXXXXNQDSDIIAGFGDRQRYFPVTISISVYLVLTALYRLWEETW-PGSGGWALDIGGP 177
                  NQDSD+++GFGD+QRYFPVT++IS YL L++LY +WEE W  G+ GW ++IGG 
Sbjct: 978  PILLLLNQDSDLLSGFGDKQRYFPVTVAISTYLALSSLYTVWEEVWFGGNTGWGVEIGGR 1037

Query: 178  GWFFAVKNVALLMMTLPNHILFNRFMWDY-VRQTDAKXXXXXXXXXXSIIMTDILTVRVL 236
             WFFAVKN+ALL++T P HI+FNR++W Y  + TDA           ++I+TD+  VRVL
Sbjct: 1038 EWFFAVKNLALLILTAPGHIIFNRYVWSYTTKHTDASPMLTVPLSFAAVIITDVFQVRVL 1097

Query: 237  GLLGAIYSLSQYVISRRIRLAGMKYI 262
            G+LG +YS +QYVISR+  + G++YI
Sbjct: 1098 GVLGIVYSAAQYVISRQQYMKGLRYI 1123



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.142    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,538,424
Number of extensions: 155075
Number of successful extensions: 345
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 342
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 165
Effective length of database: 8,447,217
Effective search space: 1393790805
Effective search space used: 1393790805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)