BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0528200 Os11g0528200|AK071810
         (262 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0528200  Conserved hypothetical protein                      452   e-127

>Os11g0528200 Conserved hypothetical protein
          Length = 262

 Score =  452 bits (1162), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/262 (87%), Positives = 228/262 (87%)

Query: 1   MLAIEGARMSLLGLYAAIFMIIALEIKFELALLLREKAADKGVTHGPPGRSSAFPPKXXX 60
           MLAIEGARMSLLGLYAAIFMIIALEIKFELALLLREKAADKGVTHGPPGRSSAFPPK   
Sbjct: 1   MLAIEGARMSLLGLYAAIFMIIALEIKFELALLLREKAADKGVTHGPPGRSSAFPPKARL 60

Query: 61  XXXXXXXXXPTFTIKRLAAEAAWMPAIGNFSTVLCFIICLILNVTLTGGSNRXXXXXXXX 120
                    PTFTIKRLAAEAAWMPAIGNFSTVLCFIICLILNVTLTGGSNR        
Sbjct: 61  LQQRRAHAAPTFTIKRLAAEAAWMPAIGNFSTVLCFIICLILNVTLTGGSNRAIFFLAPI 120

Query: 121 XXXXNQDSDIIAGFGDRQRYFPVTISISVYLVLTALYRLWEETWPGSGGWALDIGGPGWF 180
               NQDSDIIAGFGDRQRYFPVTISISVYLVLTALYRLWEETWPGSGGWALDIGGPGWF
Sbjct: 121 LLLLNQDSDIIAGFGDRQRYFPVTISISVYLVLTALYRLWEETWPGSGGWALDIGGPGWF 180

Query: 181 FAVKNVALLMMTLPNHILFNRFMWDYVRQTDAKXXXXXXXXXXSIIMTDILTVRVLGLLG 240
           FAVKNVALLMMTLPNHILFNRFMWDYVRQTDAK          SIIMTDILTVRVLGLLG
Sbjct: 181 FAVKNVALLMMTLPNHILFNRFMWDYVRQTDAKLLLTLPLNLPSIIMTDILTVRVLGLLG 240

Query: 241 AIYSLSQYVISRRIRLAGMKYI 262
           AIYSLSQYVISRRIRLAGMKYI
Sbjct: 241 AIYSLSQYVISRRIRLAGMKYI 262



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.328    0.142    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,476,835
Number of extensions: 266402
Number of successful extensions: 500
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 163
Effective length of database: 11,866,615
Effective search space: 1934258245
Effective search space used: 1934258245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 155 (64.3 bits)