Os11g0483600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA-binding SAP domain containing protein.
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Os11g0483600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA-binding SAP domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.62 | 0.26 | 12.3 | -0.267 | 0.156 | -1.18 | -0.0602 | 0.257 | 0.0667 | 21.6 | 26.62 | 34 | -- | -- |
| 30.71 | 0.258 | 12.3 | -0.225 | 0.154 | -1.19 | -0.0165 | -- | 0.0754 | 21.3 | 26.38 | 33 | -- | -- |
| 30.63 | 0.258 | 12.3 | -0.261 | 0.156 | -1.19 | -- | 0.225 | 0.0686 | 21.5 | 26.56 | 34 | -- | -- |
| 30.7 | 0.258 | 12.3 | -0.223 | 0.157 | -1.2 | -- | -- | 0.0771 | 21.5 | 26.4 | 33 | -- | -- |
| 31.19 | 0.26 | 12.3 | -0.279 | -- | -1.18 | -- | 0.288 | 0.0709 | -- | 26.53 | 125 | -- | -- |
| 51.59 | 0.337 | 12.2 | 0.0673 | 0.294 | -- | -0.0748 | -- | 0.342 | 16.1 | -- | -- | -- | -- |
| 51.61 | 0.336 | 12.2 | 0.0665 | 0.293 | -- | -- | -- | 0.342 | 16.1 | -- | -- | -- | -- |
| 31.31 | 0.261 | 12.3 | -0.234 | -- | -1.2 | -- | -- | 0.0818 | -- | 26.4 | 125 | -- | -- |
| 31.87 | 0.263 | 12.3 | -- | 0.147 | -1.11 | -- | -- | 0.12 | 20.6 | 26.28 | 40 | -- | -- |
| 56.28 | 0.351 | 12.2 | 0.0546 | -- | -- | -- | -- | 0.334 | -- | -- | -- | -- | -- |
| 51.73 | 0.336 | 12.2 | -- | 0.292 | -- | -- | -- | 0.335 | 16.1 | -- | -- | -- | -- |
| 32.61 | 0.266 | 12.3 | -- | -- | -1.12 | -- | -- | 0.122 | -- | 26.43 | 122 | -- | -- |
| 56.36 | 0.35 | 12.2 | -- | -- | -- | -- | -- | 0.328 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.38 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 7 | 31.16 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 12 | 31.27 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 13 | 31.28 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 15 | 31.29 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 18 | 31.31 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 19 | 31.31 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 21 | 31.31 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 22 | 31.32 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 28 | 31.34 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 34 | 31.39 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 58 | 31.80 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 101 | 32.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 215 | 32.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 8 |
| 216 | 32.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 10 |
| 301 | 33.25 | temperature | 25 | 1440 | < th | dose dependent | sin | 13 | NA |
| 405 | 33.61 | temperature | 15 | 90 | > th | dose dependent | sin | 10 | NA |
| 406 | 33.61 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 424 | 33.68 | temperature | 30 | 90 | < th | dose dependent | sin | 10 | NA |
| 443 | 33.73 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 501 | 33.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 505 | 33.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 526 | 33.94 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 643 | 34.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 723 | 34.25 | humidity | 80 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 823 | 34.38 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 858 | 34.43 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 915 | 34.53 | humidity | 60 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 919 | 34.53 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 925 | 34.54 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 19 |
| 926 | 34.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 970 | 34.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 972 | 34.61 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 11 |