BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0483600 Os11g0483600|AK103748
         (185 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G63460.4  | chr5:25413605-25415399 REVERSE LENGTH=175          111   2e-25

>AT5G63460.4 | chr5:25413605-25415399 REVERSE LENGTH=175
          Length = 174

 Score =  111 bits (278), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/167 (42%), Positives = 89/167 (53%), Gaps = 23/167 (13%)

Query: 27  AAKFLSGLPSRGNFSSISASSTLGRLRVYVCEHDTDPP------------EGQVIETDTT 74
           A+KFLS LPSRG  SS   SS  G LRVY+CEHDT PP            +GQ+I+T+  
Sbjct: 16  ASKFLSDLPSRGFLSSTVVSSNPGSLRVYICEHDTSPPVIGSLRIISFRIKGQLIKTNQQ 75

Query: 75  NILIRHLQLXXXXXXXXXXXXXRDAGSRNQGETVKWKRVAPRSLDGQSSSKRPNXXXXXX 134
           NILIR L L                 S+   E    KR A R+LD +SS+KR        
Sbjct: 76  NILIRSLLLKKQKGESSSK------DSKGTAEDGPKKRAANRALDDRSSAKRAANASRQE 129

Query: 135 XXXXXXXXPGFSGHTLQTFTVERLRALLRQRGLMTKGKKDELIARLR 181
                     F     Q+ TVE+LRA+L+++GL TKG+KDELIARL+
Sbjct: 130 GSSSRTGERDF-----QSLTVEKLRAMLKEKGLPTKGRKDELIARLK 171



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,042,651
Number of extensions: 92682
Number of successful extensions: 146
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 92
Effective length of database: 8,556,881
Effective search space: 787233052
Effective search space used: 787233052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 108 (46.2 bits)