BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0483600 Os11g0483600|AK103748
         (185 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0483600  DNA-binding SAP domain containing protein           293   4e-80
Os12g0442900  DNA-binding SAP domain containing protein           159   1e-39

>Os11g0483600 DNA-binding SAP domain containing protein
          Length = 185

 Score =  293 bits (751), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 148/185 (80%), Positives = 148/185 (80%)

Query: 1   MAAEXXXXXXXXXXKASWLGMSSEGGAAKFLSGLPSRGNFSSISASSTLGRLRVYVCEHD 60
           MAAE          KASWLGMSSEGGAAKFLSGLPSRGNFSSISASSTLGRLRVYVCEHD
Sbjct: 1   MAAEGSSRGGGGGRKASWLGMSSEGGAAKFLSGLPSRGNFSSISASSTLGRLRVYVCEHD 60

Query: 61  TDPPEGQVIETDTTNILIRHLQLXXXXXXXXXXXXXRDAGSRNQGETVKWKRVAPRSLDG 120
           TDPPEGQVIETDTTNILIRHLQL             RDAGSRNQGETVKWKRVAPRSLDG
Sbjct: 61  TDPPEGQVIETDTTNILIRHLQLKKKEMDAKEAKEARDAGSRNQGETVKWKRVAPRSLDG 120

Query: 121 QSSSKRPNXXXXXXXXXXXXXXPGFSGHTLQTFTVERLRALLRQRGLMTKGKKDELIARL 180
           QSSSKRPN              PGFSGHTLQTFTVERLRALLRQRGLMTKGKKDELIARL
Sbjct: 121 QSSSKRPNLGSSSGLSSAEEAAPGFSGHTLQTFTVERLRALLRQRGLMTKGKKDELIARL 180

Query: 181 RESQD 185
           RESQD
Sbjct: 181 RESQD 185



>Os12g0442900 DNA-binding SAP domain containing protein
          Length = 178

 Score =  159 bits (401), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/159 (54%), Positives = 102/159 (64%), Gaps = 6/159 (3%)

Query: 27  AAKFLSGLPSRGNFSSISASSTLGRLRVYVCEHDTDPPEGQVIETDTTNILIRHLQLXXX 86
           A   L+GLPSRGNF + S +S++G L VYVC HDT PPEGQVI+TDTTNILIR LQL   
Sbjct: 26  AGSLLAGLPSRGNFVADSIASSMGGLPVYVCLHDTAPPEGQVIDTDTTNILIRSLQL--- 82

Query: 87  XXXXXXXXXXRDAGSRNQGETVKWKRVAPRSLDGQSSSKRPNXXXXXXXXXXXXXXPGFS 146
                     +D GSR  GE+ K KR A R LDG++ SKR N                FS
Sbjct: 83  ---SKQKNEAKDVGSRTPGESSKGKRSASRLLDGKNPSKRANTGSTAGSSAHGELGSVFS 139

Query: 147 GHTLQTFTVERLRALLRQRGLMTKGKKDELIARLRESQD 185
             TLQ+FTVE+LR LL++RGL  KGKKDELIARL ES +
Sbjct: 140 EQTLQSFTVEKLRILLKERGLSPKGKKDELIARLIESSE 178



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,051,190
Number of extensions: 159022
Number of successful extensions: 293
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 2
Length of query: 185
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 90
Effective length of database: 12,075,471
Effective search space: 1086792390
Effective search space used: 1086792390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 153 (63.5 bits)