Os11g0482000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S5-1.
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Os11g0482000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 40S ribosomal protein S5-1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.3 | 0.4 | 13 | 0.82 | 0.639 | 0.958 | 0.7 | 0.534 | 0.109 | 17.4 | 20.5 | 1331 | -- | -- |
| 72.69 | 0.397 | 13 | 0.708 | 0.62 | 0.918 | 0.732 | -- | 0.0817 | 17.6 | 20.5 | 1573 | -- | -- |
| 73.46 | 0.399 | 13 | 0.806 | 0.646 | 0.963 | -- | 0.488 | 0.107 | 17.2 | 20.52 | 1305 | -- | -- |
| 73.93 | 0.4 | 13 | 0.72 | 0.645 | 0.898 | -- | -- | 0.0907 | 17.2 | 20.58 | 1305 | -- | -- |
| 93.86 | 0.451 | 13 | 0.751 | -- | 0.983 | -- | 0.401 | 0.0815 | -- | 20.5 | 1625 | -- | -- |
| 90.73 | 0.447 | 13 | 1.09 | 0.61 | -- | 0.881 | -- | 0.29 | 17.7 | -- | -- | -- | -- |
| 92.58 | 0.451 | 13 | 1.09 | 0.615 | -- | -- | -- | 0.294 | 17.5 | -- | -- | -- | -- |
| 94.14 | 0.452 | 13 | 0.687 | -- | 0.917 | -- | -- | 0.0533 | -- | 20.51 | 1707 | -- | -- |
| 79.78 | 0.416 | 13.1 | -- | 0.603 | 1.14 | -- | -- | -0.081 | 17.2 | 19.1 | 18378 | -- | -- |
| 112.28 | 0.495 | 13 | 1.07 | -- | -- | -- | -- | 0.279 | -- | -- | -- | -- | -- |
| 123.78 | 0.52 | 13 | -- | 0.598 | -- | -- | -- | 0.172 | 17.6 | -- | -- | -- | -- |
| 99.38 | 0.464 | 13 | -- | -- | 1.18 | -- | -- | -0.0756 | -- | 19.2 | 14867 | -- | -- |
| 142.34 | 0.557 | 13 | -- | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.69 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 2 | 66.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 19 | 67.82 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 34 | 68.37 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 172 | 70.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 191 | 71.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 216 | 71.46 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 268 | 71.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 12 |
| 295 | 72.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 316 | 72.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 12 |
| 339 | 72.18 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 419 | 72.43 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 552 | 72.80 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 613 | 72.94 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 632 | 72.99 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 9 |
| 658 | 73.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 669 | 73.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 675 | 73.08 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 694 | 73.10 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 749 | 73.18 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 768 | 73.21 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 775 | 73.22 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 905 | 73.43 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 906 | 73.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |