BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0482000 Os11g0482000|AK059558
(234 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0482000 Similar to 40S ribosomal protein S5-1 408 e-114
AK059823 407 e-114
Os01g0100700 Similar to 40S ribosomal protein S5-1 377 e-105
AK110655 307 5e-84
AK108544 280 9e-76
AK062556 278 2e-75
>Os11g0482000 Similar to 40S ribosomal protein S5-1
Length = 234
Score = 408 bits (1049), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 38 EVELPQQEVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCP 97
EVELPQQEVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCP
Sbjct: 38 EVELPQQEVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCP 97
Query: 98 IVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATR 157
IVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATR
Sbjct: 98 IVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATR 157
Query: 158 IGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNS 217
IGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNS
Sbjct: 158 IGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNS 217
Query: 218 YAIKKKDEIERVAKANR 234
YAIKKKDEIERVAKANR
Sbjct: 218 YAIKKKDEIERVAKANR 234
>AK059823
Length = 199
Score = 407 bits (1045), Expect = e-114, Method: Compositional matrix adjust.
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 38 EVELPQQEVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCP 97
EVELPQQEVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCP
Sbjct: 3 EVELPQQEVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCP 62
Query: 98 IVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATR 157
IVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATR
Sbjct: 63 IVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATR 122
Query: 158 IGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNS 217
IGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNS
Sbjct: 123 IGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNS 182
Query: 218 YAIKKKDEIERVAKANR 234
YAIKKKDEIERVAKANR
Sbjct: 183 YAIKKKDEIERVAKANR 199
>Os01g0100700 Similar to 40S ribosomal protein S5-1
Length = 200
Score = 377 bits (969), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/188 (97%), Positives = 186/188 (98%)
Query: 47 KLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTNSL 106
KLF+ WSFEDVQVNDISLADYLAV+ TKHATYLPHTAGRYSAKRFRKAQCP+VERLTNSL
Sbjct: 13 KLFNCWSFEDVQVNDISLADYLAVSSTKHATYLPHTAGRYSAKRFRKAQCPLVERLTNSL 72
Query: 107 MMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRR 166
MMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRR
Sbjct: 73 MMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRR 132
Query: 167 QAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEI 226
QAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEI
Sbjct: 133 QAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEI 192
Query: 227 ERVAKANR 234
ERVAKANR
Sbjct: 193 ERVAKANR 200
>AK110655
Length = 207
Score = 307 bits (786), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 148/197 (75%), Positives = 171/197 (86%), Gaps = 4/197 (2%)
Query: 39 VELPQ-QEVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCP 97
V PQ V+LF +W ++V+V DISL DY+A+ ++A Y PHTAGRY K F+KAQ P
Sbjct: 14 VAAPQVGGVRLFGKWDPQEVEVKDISLTDYIAL---RNAVYTPHTAGRYQKKAFKKAQTP 70
Query: 98 IVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATR 157
IVERL NSLMMHGRNNGKK+MAVRIV HA EII+LLTDANPIQ++VDAIIN+GPRED+TR
Sbjct: 71 IVERLVNSLMMHGRNNGKKLMAVRIVAHAFEIINLLTDANPIQILVDAIINTGPREDSTR 130
Query: 158 IGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNS 217
IGSAG VRRQAVD+SPLRRVN AI LLTTG RESAFRN+K+IAECLADELINAAKGSSNS
Sbjct: 131 IGSAGTVRRQAVDVSPLRRVNTAITLLTTGTRESAFRNVKSIAECLADELINAAKGSSNS 190
Query: 218 YAIKKKDEIERVAKANR 234
YAIKK+DE+ERVA++NR
Sbjct: 191 YAIKKRDEMERVARSNR 207
>AK108544
Length = 226
Score = 280 bits (715), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 128/189 (67%), Positives = 158/189 (83%), Gaps = 1/189 (0%)
Query: 46 VKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTNS 105
V LF++W + V V D SL DYL + K+A ++PHTAGRY+ KRFRKAQCPIVER+ NS
Sbjct: 39 VALFNKWPTDSVTVEDNSLRDYLPIK-DKYAVFVPHTAGRYAKKRFRKAQCPIVERMINS 97
Query: 106 LMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVR 165
+MMHGRN+GKK+MA+RI++ A EIIHL+ NP+QV A+ NSGPRED+TRIGSAG VR
Sbjct: 98 MMMHGRNSGKKLMAMRILQQAFEIIHLVNGENPLQVFAKAVQNSGPREDSTRIGSAGVVR 157
Query: 166 RQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDE 225
RQAVD+SPLRR+NQAIYL++ GAR +AFRN+K++ ECLADE++NAA S NSYA+KKKDE
Sbjct: 158 RQAVDVSPLRRINQAIYLMSVGARNNAFRNLKSVGECLADEILNAAADSQNSYAVKKKDE 217
Query: 226 IERVAKANR 234
IERVAKANR
Sbjct: 218 IERVAKANR 226
>AK062556
Length = 190
Score = 278 bits (712), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 125/188 (66%), Positives = 155/188 (82%), Gaps = 4/188 (2%)
Query: 47 KLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTNSL 106
KLF +W+F DV V+D+SL DY++ P Y PH+AGR++ +RFRKA+CPI ERL N L
Sbjct: 7 KLFGKWTFHDVTVSDLSLRDYISTTPV----YAPHSAGRFTKRRFRKAKCPIAERLANGL 62
Query: 107 MMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRR 166
M GR NGKK++A RI+KH EII+L+TD+NPIQV+VDA+ G RED+TR+G+ G VRR
Sbjct: 63 MFTGRGNGKKLLAARILKHTFEIINLMTDSNPIQVVVDAVAKGGSREDSTRVGTGGVVRR 122
Query: 167 QAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEI 226
QAVD+SP+RRV++AIYL+ GAR SAFRN+KT+ ECLADELINAAKGSSNS+AIKKKDE
Sbjct: 123 QAVDVSPMRRVDEAIYLMCKGARASAFRNLKTMPECLADELINAAKGSSNSFAIKKKDET 182
Query: 227 ERVAKANR 234
ERVAKANR
Sbjct: 183 ERVAKANR 190
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.131 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,804,108
Number of extensions: 207877
Number of successful extensions: 513
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 511
Number of HSP's successfully gapped: 6
Length of query: 234
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 136
Effective length of database: 11,918,829
Effective search space: 1620960744
Effective search space used: 1620960744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)