BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0482000 Os11g0482000|AK059558
(234 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G37270.1 | chr2:15647883-15649042 REVERSE LENGTH=208 365 e-101
AT3G11940.1 | chr3:3778175-3779354 REVERSE LENGTH=208 356 7e-99
ATCG00900.1 | chrC:97478-97945 REVERSE LENGTH=156 60 1e-09
ATCG01240.1 | chrC:140704-141171 FORWARD LENGTH=156 60 1e-09
>AT2G37270.1 | chr2:15647883-15649042 REVERSE LENGTH=208
Length = 207
Score = 365 bits (937), Expect = e-101, Method: Compositional matrix adjust.
Identities = 173/200 (86%), Positives = 187/200 (93%), Gaps = 3/200 (1%)
Query: 38 EVELPQQ---EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKA 94
+ E+ QQ EVKLF+RWSF+DV V DISL DY+ V P+KHAT++PHTAGRYS KRFRKA
Sbjct: 8 DAEIQQQLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKA 67
Query: 95 QCPIVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPRED 154
QCPIVERLTNSLMMHGRNNGKK+MAVRIVKHAMEIIHLL+D NPIQVI+DAI+NSGPRED
Sbjct: 68 QCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPRED 127
Query: 155 ATRIGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGS 214
ATRIGSAG VRRQAVDISPLRRVNQAI+LLTTGARE+AFRNIKTIAECLADELINAAKGS
Sbjct: 128 ATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGS 187
Query: 215 SNSYAIKKKDEIERVAKANR 234
SNSYAIKKKDEIERVAKANR
Sbjct: 188 SNSYAIKKKDEIERVAKANR 207
>AT3G11940.1 | chr3:3778175-3779354 REVERSE LENGTH=208
Length = 207
Score = 356 bits (913), Expect = 7e-99, Method: Compositional matrix adjust.
Identities = 166/190 (87%), Positives = 180/190 (94%)
Query: 45 EVKLFSRWSFEDVQVNDISLADYLAVNPTKHATYLPHTAGRYSAKRFRKAQCPIVERLTN 104
EVKLF+RW+++DV V DISL DY+ V KHAT++PHTAGRYS KRFRKAQCPIVERLTN
Sbjct: 18 EVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77
Query: 105 SLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAV 164
SLMMHGRNNGKK+MAVRIVKHAMEIIHLL+D NPIQVI+DAI+NSGPREDATRIGSAG V
Sbjct: 78 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVV 137
Query: 165 RRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 224
RRQAVDISPLRRVNQAI+L+TTGARE+AFRNIKTIAECLADELINAAKGSSNSYAIKKKD
Sbjct: 138 RRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKD 197
Query: 225 EIERVAKANR 234
EIERVAKANR
Sbjct: 198 EIERVAKANR 207
>ATCG00900.1 | chrC:97478-97945 REVERSE LENGTH=156
Length = 155
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 13/139 (9%)
Query: 98 IVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGP--REDA 155
+V L N ++ HG KK +A +I+ A++ I T+ NP+ V+ AI P A
Sbjct: 22 LVNMLVNRILKHG----KKSLAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKA 77
Query: 156 TRIGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSS 215
R+G G+ + ++I + AI L +R+ RN +A L+ EL++AAKGS
Sbjct: 78 RRVG--GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRN---MAFKLSSELVDAAKGSG 132
Query: 216 NSYAIKKKDEIERVAKANR 234
+ AI+KK+E R+A+ANR
Sbjct: 133 D--AIRKKEETHRMAEANR 149
>ATCG01240.1 | chrC:140704-141171 FORWARD LENGTH=156
Length = 155
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 13/139 (9%)
Query: 98 IVERLTNSLMMHGRNNGKKIMAVRIVKHAMEIIHLLTDANPIQVIVDAIINSGP--REDA 155
+V L N ++ HG KK +A +I+ A++ I T+ NP+ V+ AI P A
Sbjct: 22 LVNMLVNRILKHG----KKSLAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKA 77
Query: 156 TRIGSAGAVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSS 215
R+G G+ + ++I + AI L +R+ RN +A L+ EL++AAKGS
Sbjct: 78 RRVG--GSTHQVPIEIGSTQGKALAIRWLLGASRKRPGRN---MAFKLSSELVDAAKGSG 132
Query: 216 NSYAIKKKDEIERVAKANR 234
+ AI+KK+E R+A+ANR
Sbjct: 133 D--AIRKKEETHRMAEANR 149
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.131 0.366
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,752,894
Number of extensions: 134458
Number of successful extensions: 357
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 4
Length of query: 234
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 139
Effective length of database: 8,502,049
Effective search space: 1181784811
Effective search space used: 1181784811
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)