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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0294400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WW/Rsp5/WWP domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.71 (0.031) R2 : 0.331
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.45 (0.0979) R2dE : 0.326 R2E : 0.33
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0445 (0.0658) R2dN8 : 0.000881 R2N8 : 0.00491
σ : 0.581
deviance : 155.71
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 26.7
memory length : 4980
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
142.12 0.56 3.66 0.207 0.227 -1.53 -1.36 1.77 0.0497 22.4 26.7 4986 -- --
144.06 0.559 3.72 -0.265 0.239 -1.41 -1.31 -- -0.0804 22.6 26.7 5018 -- --
149.26 0.569 3.66 0.252 0.251 -1.54 -- 1.71 0.0388 21.3 26.7 4999 -- --
150.96 0.572 3.72 -0.227 0.255 -1.43 -- -- -0.0722 21.5 26.6 5035 -- --
152.87 0.576 3.65 0.228 -- -1.5 -- 1.69 0.0359 -- 26.75 4989 -- --
204.68 0.671 3.76 -0.838 0.101 -- -1.44 -- -0.274 23.2 -- -- -- --
213.44 0.684 3.76 -0.778 0.116 -- -- -- -0.268 21.9 -- -- -- --
154.5 0.579 3.71 -0.247 -- -1.39 -- -- -0.0713 -- 26.7 4980 -- --
151.99 0.574 3.72 -- 0.253 -1.49 -- -- -0.0446 21.6 26.6 5048 -- --
214.24 0.684 3.76 -0.777 -- -- -- -- -0.268 -- -- -- -- --
229.4 0.708 3.74 -- 0.114 -- -- -- -0.181 21.4 -- -- -- --
155.71 0.581 3.71 -- -- -1.45 -- -- -0.0445 -- 26.7 4980 -- --
230.16 0.708 3.74 -- -- -- -- -- -0.182 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 142.25 radiation 1 14400 < th dose independent rect. 18 1
3 142.28 radiation 1 14400 < th dose independent rect. 18 10
4 142.29 radiation 1 14400 > th dose independent rect. 18 1
11 142.29 radiation 1 14400 < th dose independent rect. 18 7
21 142.36 radiation 1 43200 < th dose dependent rect. 3 2
26 142.59 radiation 1 4320 < th dose dependent rect. 18 1
33 142.97 radiation 1 4320 < th dose dependent rect. 18 11
36 143.22 radiation 1 43200 < th dose dependent rect. 21 8
44 143.96 temperature 20 14400 < th dose independent rect. 23 1
45 144.24 temperature 20 14400 < th dose independent rect. 5 1
46 144.34 temperature 20 4320 > th dose dependent rect. 4 5
48 144.44 radiation 1 14400 < th dose dependent rect. 18 23
52 144.50 radiation 1 14400 < th dose dependent rect. 18 21
54 144.53 temperature 20 14400 > th dose independent rect. 5 1
57 144.62 temperature 20 14400 > th dose independent rect. 23 3
65 144.76 temperature 20 14400 < th dose independent rect. 23 7
73 144.86 temperature 20 14400 > th dose independent rect. 23 7
91 144.97 temperature 25 14400 < th dose independent rect. 18 1
110 145.10 radiation 1 14400 < th dose dependent rect. 6 23
125 145.22 temperature 25 14400 > th dose independent rect. 18 1
128 145.23 radiation 1 14400 < th dose dependent rect. 6 13
133 145.25 radiation 1 14400 < th dose dependent rect. 6 17
147 145.29 temperature 25 4320 > th dose independent rect. 7 4
153 145.31 temperature 25 4320 > th dose independent rect. 6 6
155 145.31 radiation 1 14400 < th dose dependent rect. 9 20
163 145.37 temperature 25 4320 < th dose independent rect. 7 4
204 145.55 temperature 25 4320 < th dose independent rect. 6 6
224 145.63 radiation 1 14400 < th dose dependent sin 21 NA
261 145.75 temperature 20 14400 > th dose dependent rect. 22 2
263 145.76 humidity 90 43200 > th dose independent rect. 21 3
265 145.77 humidity 90 43200 > th dose dependent rect. 22 2
294 145.86 humidity 90 43200 > th dose dependent rect. 21 4
305 145.90 radiation 1 14400 < th dose dependent rect. 3 16
311 145.91 radiation 1 14400 < th dose dependent rect. 3 20
326 145.92 radiation 1 14400 < th dose dependent rect. 22 21
347 145.94 radiation 1 14400 < th dose dependent no NA NA
360 145.95 radiation 1 14400 < th dose dependent rect. 16 23
362 145.96 radiation 1 14400 < th dose dependent rect. 11 23
364 145.98 atmosphere 1005 43200 > th dose independent rect. 16 1
366 145.98 radiation 1 14400 < th dose dependent rect. 9 23
422 146.12 radiation 40 14400 < th dose dependent rect. 18 1
487 146.33 radiation 20 14400 < th dose dependent rect. 18 10
505 146.37 radiation 1 14400 > th dose independent rect. 18 21
556 146.53 atmosphere 1005 43200 < th dose independent rect. 16 1
557 146.53 temperature 20 4320 > th dose dependent sin 6 NA
595 146.60 temperature 25 14400 > th dose dependent rect. 15 3
623 146.66 temperature 25 14400 > th dose dependent rect. 17 1
669 146.77 temperature 15 14400 > th dose dependent rect. 2 1
673 146.78 radiation 1 14400 > th dose independent rect. 7 12
687 146.79 temperature 20 14400 < th dose independent sin 9 NA
719 146.87 temperature 25 4320 > th dose dependent rect. 11 8
741 146.92 temperature 20 14400 > th dose dependent rect. 18 14
777 146.97 radiation 1 14400 < th dose independent rect. 18 21
779 146.97 temperature 15 14400 > th dose dependent rect. 22 8
798 147.00 temperature 20 14400 > th dose independent sin 9 NA
815 147.02 temperature 25 4320 > th dose independent rect. 4 17
854 147.06 temperature 20 14400 > th dose dependent sin 11 NA
856 147.06 temperature 25 14400 > th dose dependent rect. 12 1
893 147.12 humidity 90 43200 > th dose independent rect. 18 6
907 147.13 temperature 30 14400 < th dose dependent rect. 23 1
997 147.23 temperature 20 14400 < th dose dependent rect. 24 1