BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0294400 Os11g0294400|AK062429
         (212 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G08910.1  | chr4:5712389-5713247 FORWARD LENGTH=213             53   9e-08
AT1G78170.1  | chr1:29414160-29414941 FORWARD LENGTH=222           50   6e-07
AT1G22250.1  | chr1:7858961-7859648 FORWARD LENGTH=201             47   9e-06

>AT4G08910.1 | chr4:5712389-5713247 FORWARD LENGTH=213
          Length = 212

 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 21/28 (75%), Positives = 25/28 (89%)

Query: 153 MVAVPCVNCHLLVMLCKSSPACPNCKFV 180
           MVA  C+ CH+LVMLCK+SPACPNCKF+
Sbjct: 165 MVARVCMKCHMLVMLCKASPACPNCKFM 192



>AT1G78170.1 | chr1:29414160-29414941 FORWARD LENGTH=222
          Length = 221

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 23/30 (76%)

Query: 153 MVAVPCVNCHLLVMLCKSSPACPNCKFVQP 182
           MV   C+ CH+LVMLC S+P CPNCKF+ P
Sbjct: 173 MVTTVCMKCHMLVMLCTSTPVCPNCKFMHP 202



>AT1G22250.1 | chr1:7858961-7859648 FORWARD LENGTH=201
          Length = 200

 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 17/28 (60%), Positives = 22/28 (78%)

Query: 153 MVAVPCVNCHLLVMLCKSSPACPNCKFV 180
           M+   C+ CH+LVMLCKS+  CPNCKF+
Sbjct: 152 MITTVCMKCHMLVMLCKSTLVCPNCKFM 179



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.135    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,339,138
Number of extensions: 97773
Number of successful extensions: 210
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 3
Length of query: 212
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 118
Effective length of database: 8,529,465
Effective search space: 1006476870
Effective search space used: 1006476870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)