BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0294400 Os11g0294400|AK062429
         (212 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0294400  WW/Rsp5/WWP domain containing protein               269   1e-72
Os12g0233100  WW/Rsp5/WWP domain containing protein               103   7e-23

>Os11g0294400 WW/Rsp5/WWP domain containing protein
          Length = 212

 Score =  269 bits (687), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 146/212 (68%), Positives = 146/212 (68%)

Query: 1   MEVQPELSLGPTLLGFGVGAGAXXXXXXXXXXXXXXXXXXXXXXHFAWEEAVSHASLDLH 60
           MEVQPELSLGPTLLGFGVGAGA                      HFAWEEAVSHASLDLH
Sbjct: 1   MEVQPELSLGPTLLGFGVGAGAGKSSSSSESDGSSDDGSRKRRKHFAWEEAVSHASLDLH 60

Query: 61  LNDPLPMDWEQCLDLHSGRMYYLNRKTMRKSWVRPMEEHGGSNTLDLELNISTIPSTFHV 120
           LNDPLPMDWEQCLDLHSGRMYYLNRKTMRKSWVRPMEEHGGSNTLDLELNISTIPSTFHV
Sbjct: 61  LNDPLPMDWEQCLDLHSGRMYYLNRKTMRKSWVRPMEEHGGSNTLDLELNISTIPSTFHV 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPMVAVPCVNCHLLVMLCKSSPACPNCKFV 180
                                          PMVAVPCVNCHLLVMLCKSSPACPNCKFV
Sbjct: 121 GAGKASSGGAAAIAEDDARIAGGGGGVGSLGPMVAVPCVNCHLLVMLCKSSPACPNCKFV 180

Query: 181 QPSVXXXXXXXXXXXXXLEATVKPLETLSLLH 212
           QPSV             LEATVKPLETLSLLH
Sbjct: 181 QPSVPAPAMPRTPPRRRLEATVKPLETLSLLH 212



>Os12g0233100 WW/Rsp5/WWP domain containing protein
          Length = 138

 Score =  103 bits (258), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/145 (46%), Positives = 76/145 (52%), Gaps = 17/145 (11%)

Query: 76  HSGRMYYLNRKTMRKSWVRPMEEHGGSNTLDLELNISTIPSTFHV--------XXXXXXX 127
            SGRMYYLNRKT++KSW+RP E+     +++LELNIST   T  V               
Sbjct: 3   QSGRMYYLNRKTLKKSWIRPKEQ-----SVNLELNISTTQPTVVVVPTIIDGGSTGAAAT 57

Query: 128 XXXXXXXXXXXXXXXXXXXXXXXXPMVAVPCVNCHLLVMLCKSSPACPNCKFVQPSVXXX 187
                                    MVAVPCVNCHLLVMLCKSSP+CPNCKFVQ      
Sbjct: 58  PVAVAVVAEETKKGGTIVSSGPGGNMVAVPCVNCHLLVMLCKSSPSCPNCKFVQ---PLA 114

Query: 188 XXXXXXXXXXLEATVKPLETLSLLH 212
                     L+A VKPLETLSLLH
Sbjct: 115 PPPPALPHRKLDA-VKPLETLSLLH 138



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,463,018
Number of extensions: 164838
Number of successful extensions: 300
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 297
Number of HSP's successfully gapped: 2
Length of query: 212
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 115
Effective length of database: 11,971,043
Effective search space: 1376669945
Effective search space used: 1376669945
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)