FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0195800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0306) R2 : 0.00184
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.059 (0.0643) R2dN8 : 0.00238 R2N8 : 0.00184
σ : 0.575
deviance : 151.98
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
130.72 0.537 3.06 -0.553 0.261 6.02 -0.748 -22.3 -0.15 0.343 0.2648 97 -- --
134.33 0.544 3.11 -0.666 0.276 0.326 -0.685 -- -0.137 0.0916 8.057 27 -- --
132.92 0.537 3.06 -0.536 0.263 6.01 -- -21.9 -0.152 0.357 0.5 101 -- --
136.35 0.547 3.1 -0.638 0.279 0.399 -- -- -0.134 0.0994 8.447 58 -- --
137.09 0.545 3.05 -0.525 -- 6 -- -22.1 -0.145 -- 0.4996 105 -- --
134.44 0.544 3.11 -0.671 0.274 -- -0.693 -- -0.137 0.0844 -- -- -- --
136.52 0.547 3.1 -0.644 0.277 -- -- -- -0.133 0.0689 -- -- -- --
141.25 0.556 3.1 -0.631 -- 0.311 -- -- -0.13 -- 8.447 58 -- --
145.2 0.561 3.1 -- 0.268 0.352 -- -- -0.102 0.182 8.136 2798 -- --
141.35 0.556 3.1 -0.635 -- -- -- -- -0.129 -- -- -- -- --
147.44 0.568 3.09 -- 0.268 -- -- -- -0.0617 23.9 -- -- -- --
149.73 0.57 3.09 -- -- 0.352 -- -- -0.0966 -- 10.7 2798 -- --
151.98 0.575 3.08 -- -- -- -- -- -0.059 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 121.51 atmosphere 1005.0 270 < th dose independent rect. 17 2
2 121.94 atmosphere 1005.0 270 < th dose independent rect. 16 4
13 125.27 temperature 25.0 90 > th dose independent rect. 2 1
14 125.33 temperature 25.0 90 > th dose dependent rect. 2 1
15 125.37 atmosphere 1005.0 30 > th dose dependent rect. 2 1
16 125.38 radiation 1.0 43200 < th dose dependent rect. 3 1
17 125.45 atmosphere 1005.0 30 > th dose independent rect. 2 1
19 125.46 humidity 80.0 30 > th dose independent rect. 2 1
25 125.50 humidity 80.0 30 > th dose dependent rect. 2 1
26 125.51 wind 5.0 30 < th dose independent rect. 2 1
28 125.51 wind 3.0 30 < th dose dependent rect. 2 1
41 125.57 temperature 10.0 30 > th dose independent rect. 2 1
43 125.57 temperature 30.0 30 < th dose independent rect. 2 1
44 125.57 humidity 50.0 30 > th dose independent rect. 2 1
48 125.57 atmosphere 1010.0 30 < th dose independent rect. 2 1
50 125.57 radiation 1.0 30 < th dose independent rect. 2 1
55 125.57 precipitation 0.1 30 < th dose independent rect. 2 1
56 125.57 temperature 10.0 30 > th dose independent rect. 3 23
57 125.57 radiation 1.0 30 < th dose dependent rect. 2 1
63 125.57 precipitation 0.1 30 < th dose dependent rect. 2 1
70 125.66 wind 9.0 1440 < th dose independent rect. 3 1
71 125.66 temperature 10.0 1440 > th dose independent rect. 3 1
74 125.66 temperature 30.0 1440 < th dose independent rect. 3 1
78 125.66 humidity 50.0 1440 > th dose independent rect. 3 1
87 125.66 atmosphere 995.0 1440 > th dose independent rect. 3 1
88 125.66 radiation 1.0 1440 < th dose independent rect. 3 1
108 125.66 temperature 10.0 1440 > th dose independent rect. 4 23
111 125.66 radiation 1.0 1440 < th dose dependent rect. 3 1
123 125.70 temperature 30.0 30 < th dose dependent rect. 2 1
125 125.71 atmosphere 995.0 30 > th dose independent rect. 3 23
127 125.73 atmosphere 1015.0 30 < th dose dependent rect. 2 1
132 125.78 wind 1.0 30 > th dose independent rect. 2 1
136 125.84 precipitation 0.1 30 < th dose independent rect. 3 23
137 125.84 precipitation 0.1 30 < th dose dependent rect. 3 23
201 126.68 atmosphere 1005.0 270 < th dose dependent rect. 17 2
204 126.73 wind 9.0 30 < th dose independent rect. 3 23
216 127.24 wind 1.0 10 > th dose independent rect. 20 23
217 127.24 atmosphere 1010.0 270 < th dose dependent rect. 16 4
221 127.37 temperature 20.0 10 > th dose independent rect. 19 1
236 127.80 atmosphere 1010.0 10 < th dose dependent rect. 19 1
243 127.93 wind 5.0 10 < th dose independent rect. 19 1
252 128.07 temperature 15.0 10 > th dose dependent rect. 19 1
254 128.11 atmosphere 1000.0 10 > th dose dependent rect. 2 7
259 128.18 atmosphere 1010.0 10 < th dose dependent rect. 19 3
265 128.27 atmosphere 1005.0 30 > th dose independent rect. 2 7
278 128.49 wind 1.0 10 > th dose independent rect. 22 21
282 128.54 humidity 50.0 30 > th dose independent rect. 3 23
286 128.64 wind 7.0 90 > th dose dependent rect. 21 3
300 128.78 wind 7.0 90 > th dose independent rect. 20 4
314 128.93 wind 7.0 30 > th dose dependent rect. 19 10
319 128.96 wind 5.0 270 > th dose independent rect. 17 1
324 129.01 wind 7.0 30 > th dose independent rect. 20 9
339 129.06 wind 7.0 90 > th dose independent rect. 21 1
345 129.09 wind 7.0 30 > th dose dependent rect. 21 8
355 129.11 radiation 1.0 270 > th dose independent rect. 18 11
374 129.14 temperature 30.0 30 < th dose independent rect. 3 23
438 129.28 precipitation 0.1 90 > th dose independent rect. 21 1
442 129.28 precipitation 0.1 90 > th dose dependent rect. 21 1
444 129.28 humidity 80.0 10 < th dose dependent rect. 19 4
445 129.29 wind 3.0 10 < th dose independent rect. 22 4
446 129.29 wind 3.0 10 < th dose independent rect. 20 6
456 129.32 temperature 10.0 30 > th dose dependent rect. 20 6
465 129.37 humidity 80.0 10 < th dose dependent rect. 19 11
468 129.39 wind 9.0 10 < th dose dependent rect. 19 1
471 129.40 atmosphere 1005.0 270 > th dose dependent rect. 14 7
486 129.46 atmosphere 1005.0 90 > th dose dependent rect. 1 5
496 129.54 wind 3.0 10 > th dose independent rect. 19 1
507 129.55 wind 1.0 10 > th dose independent rect. 22 8
508 129.55 temperature 10.0 30 > th dose dependent rect. 22 4
521 129.60 humidity 90.0 10 < th dose dependent rect. 19 1
530 129.63 atmosphere 1005.0 270 > th dose dependent rect. 17 3
536 129.64 temperature 20.0 30 > th dose dependent rect. 20 6
559 129.68 wind 1.0 10 > th dose independent rect. 20 10
593 129.75 wind 5.0 30 < th dose dependent rect. 20 6
602 129.78 humidity 80.0 90 < th dose dependent rect. 18 13
603 129.79 precipitation 0.1 10 < th dose independent rect. 19 1
604 129.79 atmosphere 1005.0 270 > th dose independent rect. 18 2
605 129.79 humidity 80.0 30 > th dose independent rect. 20 6
606 129.79 precipitation 0.1 10 < th dose dependent rect. 19 1
611 129.80 temperature 10.0 720 > th dose dependent rect. 2 1
616 129.82 temperature 10.0 10 > th dose independent rect. 19 1
618 129.82 temperature 30.0 10 < th dose independent rect. 19 1
619 129.82 humidity 50.0 10 > th dose independent rect. 19 1
621 129.82 atmosphere 995.0 10 > th dose independent rect. 19 1
624 129.82 radiation 1.0 10 < th dose independent rect. 19 1
630 129.82 temperature 25.0 10 < th dose independent rect. 16 17
631 129.82 temperature 10.0 10 > th dose independent rect. 20 23
632 129.82 radiation 1.0 10 < th dose dependent rect. 19 1
641 129.83 wind 9.0 10 < th dose independent rect. 20 23
647 129.84 wind 5.0 30 < th dose dependent rect. 22 4
652 129.86 atmosphere 995.0 720 > th dose dependent rect. 14 1
658 129.89 wind 9.0 1440 < th dose independent rect. 23 4
665 129.89 humidity 80.0 90 < th dose dependent rect. 18 6
681 129.92 precipitation 0.1 10 < th dose independent rect. 20 23
684 129.92 wind 9.0 30 < th dose dependent rect. 14 12
686 129.92 precipitation 0.1 10 < th dose dependent rect. 20 23
698 129.96 precipitation 0.1 90 > th dose independent rect. 20 9
709 130.01 humidity 80.0 1440 < th dose independent rect. 22 5
711 130.01 humidity 80.0 1440 < th dose independent rect. 22 8
717 130.03 humidity 90.0 10 < th dose independent rect. 19 1
720 130.03 precipitation 0.1 90 > th dose dependent rect. 20 9
721 130.04 precipitation 0.1 90 > th dose independent sin 14 NA
722 130.04 atmosphere 1015.0 30 < th dose independent rect. 3 23
730 130.06 precipitation 0.1 90 < th dose independent sin 14 NA
733 130.06 precipitation 0.1 90 < th dose dependent sin 14 NA
759 130.10 temperature 30.0 720 > th dose independent rect. 13 1
760 130.10 precipitation 0.1 90 > th dose independent rect. 18 11
761 130.10 humidity 50.0 30 > th dose independent rect. 2 18
762 130.10 atmosphere 995.0 10 > th dose independent rect. 20 23
767 130.10 temperature 10.0 30 > th dose dependent rect. 2 18
772 130.12 wind 9.0 720 > th dose independent rect. 18 1
774 130.12 wind 1.0 10 > th dose independent rect. 22 14
777 130.13 humidity 80.0 1440 > th dose independent rect. 22 5
778 130.13 atmosphere 1005.0 270 > th dose independent rect. 15 7
790 130.15 atmosphere 1000.0 270 > th dose dependent rect. 23 9
793 130.16 humidity 80.0 1440 > th dose independent rect. 22 8
809 130.17 humidity 50.0 30 > th dose dependent rect. 20 6
820 130.20 temperature 10.0 1440 > th dose independent rect. 21 6
823 130.20 temperature 30.0 1440 < th dose independent rect. 21 6
827 130.20 humidity 50.0 1440 > th dose independent rect. 21 6
833 130.20 atmosphere 995.0 1440 > th dose independent rect. 21 6
834 130.20 radiation 1.0 1440 < th dose independent rect. 21 6
854 130.20 temperature 10.0 1440 > th dose independent rect. 3 18
857 130.20 precipitation 0.1 30 < th dose independent rect. 2 18
859 130.20 radiation 20.0 1440 < th dose dependent rect. 21 6
864 130.20 precipitation 0.1 30 < th dose dependent rect. 2 18
865 130.21 wind 9.0 30 < th dose independent rect. 2 18
876 130.22 precipitation 0.1 90 > th dose independent rect. 20 15
896 130.26 atmosphere 1005.0 720 > th dose dependent rect. 11 4
904 130.27 atmosphere 995.0 30 > th dose independent rect. 2 18
906 130.28 atmosphere 1005.0 270 > th dose independent rect. 10 12
913 130.29 temperature 10.0 30 > th dose independent rect. 20 6
914 130.29 temperature 30.0 30 < th dose independent rect. 20 6
915 130.29 humidity 50.0 30 > th dose independent rect. 20 6
918 130.29 atmosphere 995.0 30 > th dose independent rect. 20 6
919 130.29 radiation 1.0 30 < th dose independent rect. 20 6
926 130.29 temperature 10.0 30 > th dose independent rect. 2 18
928 130.29 atmosphere 1015.0 30 < th dose independent rect. 2 18
929 130.29 humidity 50.0 30 > th dose independent rect. 2 20
933 130.29 radiation 1.0 30 < th dose dependent rect. 20 6
950 130.31 precipitation 0.1 10 < th dose independent rect. 2 20
954 130.31 precipitation 0.1 10 < th dose dependent rect. 2 20
958 130.32 humidity 70.0 10 < th dose independent rect. 19 1
965 130.32 wind 9.0 30 < th dose independent rect. 20 6
985 130.33 temperature 20.0 10 > th dose independent rect. 20 6
997 130.34 precipitation 0.1 90 > th dose independent rect. 20 21