BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0195800 Os11g0195800|AK061281
         (292 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0195800  Conserved hypothetical protein                      391   e-109
Os02g0554200  Conserved hypothetical protein                       65   6e-11

>Os11g0195800 Conserved hypothetical protein
          Length = 292

 Score =  391 bits (1005), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/292 (71%), Positives = 209/292 (71%)

Query: 1   MATDRVEVDTARPFRSVREAVAVFGERILVGDGYSRRPSNGNXXXXXXXXXXXXKHEASG 60
           MATDRVEVDTARPFRSVREAVAVFGERILVGDGYSRRPSNGN            KHEASG
Sbjct: 1   MATDRVEVDTARPFRSVREAVAVFGERILVGDGYSRRPSNGNAAAAAVVDIAIAKHEASG 60

Query: 61  DSDDATVSSXXXXXXXXXXXXXXXXXXXXXMYXXXXXXXXXXXXXNXXXXXXXXXXXXXX 120
           DSDDATVSS                     MY             N              
Sbjct: 61  DSDDATVSSPDAMEAEPEVEEDAAPAVVPMMYSAPSSPQSSPPPPNDGGDADDERDGGVV 120

Query: 121 XXXXXXXMMRSVKKLEAEVAETRQEVAQLKKRGSEMEMAVASLNAQLHRGLSKLAEMEAG 180
                  MMRSVKKLEAEVAETRQEVAQLKKRGSEMEMAVASLNAQLHRGLSKLAEMEAG
Sbjct: 121 DEGVTVAMMRSVKKLEAEVAETRQEVAQLKKRGSEMEMAVASLNAQLHRGLSKLAEMEAG 180

Query: 181 DTXXXXXXSVGGETDVSSTVATFRSERWXXXXXXXXXXSRATSCEYLPSFSHALSLGEVD 240
           DT      SVGGETDVSSTVATFRSERW          SRATSCEYLPSFSHALSLGEVD
Sbjct: 181 DTAAAARRSVGGETDVSSTVATFRSERWGGVGGGGAAVSRATSCEYLPSFSHALSLGEVD 240

Query: 241 DGELVGRRRKARKVKPIVPLIGDIIFSKRKSTKDKGGDGFYGNNGDLYSVLG 292
           DGELVGRRRKARKVKPIVPLIGDIIFSKRKSTKDKGGDGFYGNNGDLYSVLG
Sbjct: 241 DGELVGRRRKARKVKPIVPLIGDIIFSKRKSTKDKGGDGFYGNNGDLYSVLG 292



>Os02g0554200 Conserved hypothetical protein
          Length = 214

 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 67/124 (54%), Gaps = 6/124 (4%)

Query: 132 VKKLEAEVAETRQEVAQLKKRGSEMEMAVASLNAQLHRGLSKLAEMEAGDTXXXXXXSVG 191
           ++KLEAE+AE + E+ +L++R S ME AV+S+ AQL  GL+ L+   A          V 
Sbjct: 60  LRKLEAELAEAKGELERLRQRQSHMETAVSSVAAQLSTGLAILS-AGAARGKGKELAVVD 118

Query: 192 GETDVSSTVATFRSERWXXXXXXXXXXSRATSCEYLPSFSHALSLGEVDDGELVGRRRK- 250
            + D+       RS+RW            A S EYLPS S AL++  VDD   +G RR+ 
Sbjct: 119 IDVDLGGGGGRVRSDRWDESRAEEWM---AASLEYLPSLSEALAIKMVDDDRHLGERRQG 175

Query: 251 -ARK 253
            ARK
Sbjct: 176 NARK 179



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.313    0.129    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,736,800
Number of extensions: 225991
Number of successful extensions: 540
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 3
Length of query: 292
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 192
Effective length of database: 11,814,401
Effective search space: 2268364992
Effective search space used: 2268364992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)