BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0195800 Os11g0195800|AK061281
         (292 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G58070.1  | chr1:21502968-21503822 FORWARD LENGTH=285           68   5e-12
AT3G51220.1  | chr3:19021943-19022612 REVERSE LENGTH=187           50   1e-06

>AT1G58070.1 | chr1:21502968-21503822 FORWARD LENGTH=285
          Length = 284

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 80/164 (48%), Gaps = 12/164 (7%)

Query: 128 MMRSVKKLEAEVAETRQEVAQLKKRGSEMEMAVASLNAQLHRGLSKLAEMEAGDTXXXXX 187
           +M  +KKLEAE+ ET+ EV  LK+R SE E+A+A+LNA+LH+  SK+A+ EA        
Sbjct: 129 IMDVLKKLEAEITETKTEVKMLKERESETEVALATLNAELHKNKSKIAKAEADAAGKSAA 188

Query: 188 XSVGGETDVSSTVATFR--SERWXXXXXXXXXXSRATSCEYLPSFSHALSLGEVD-DGEL 244
                         +F+   E+            R    EY PS +  L   + + DG  
Sbjct: 189 AMTKS--------VSFKDTKEKENGEDQRRKELMRKMQKEY-PSLAQILDSNKGNRDGYF 239

Query: 245 VGRRRKARKVKPIVPLIGDIIFSKRKSTKDKGGDGFYGNNGDLY 288
              ++  +K KPI+PL+GD  F K+K +  +     Y  +  L+
Sbjct: 240 ANTKKTKKKKKPIIPLVGDFFFFKKKGSSPEISGPLYTTSSTLH 283



>AT3G51220.1 | chr3:19021943-19022612 REVERSE LENGTH=187
          Length = 186

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/30 (66%), Positives = 25/30 (83%)

Query: 5  RVEVDTARPFRSVREAVAVFGERILVGDGY 34
          R E++T  PFRSV+EAV +FGERIL+GD Y
Sbjct: 3  RAEIETGAPFRSVKEAVTLFGERILLGDNY 32



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.129    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,129,419
Number of extensions: 136596
Number of successful extensions: 353
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 352
Number of HSP's successfully gapped: 2
Length of query: 292
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 194
Effective length of database: 8,419,801
Effective search space: 1633441394
Effective search space used: 1633441394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)