Os11g0182400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os11g0182400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.69 | 0.292 | 8.25 | 0.0045 | 0.571 | 0.541 | 0.467 | -1.01 | 0.3 | 1.89 | 84.07 | 245 | -- | -- |
| 40.98 | 0.298 | 8.23 | -0.044 | 0.554 | 0.508 | 0.102 | -- | 0.303 | 2.04 | 84.28 | 226 | -- | -- |
| 39.28 | 0.292 | 8.25 | -0.0189 | 0.577 | 0.554 | -- | -0.763 | 0.297 | 1.95 | 84.99 | 245 | -- | -- |
| 40.96 | 0.298 | 8.24 | -0.055 | 0.553 | 0.523 | -- | -- | 0.294 | 2.08 | 84.33 | 226 | -- | -- |
| 45.7 | 0.317 | 8.23 | 0.0228 | -- | 0.82 | -- | -0.224 | 0.306 | -- | 70.49 | 101 | -- | -- |
| 47.85 | 0.324 | 8.25 | 0.0149 | 0.829 | -- | 0.125 | -- | 0.215 | 2.97 | -- | -- | -- | -- |
| 47.9 | 0.324 | 8.25 | 0.0121 | 0.83 | -- | -- | -- | 0.214 | 3 | -- | -- | -- | -- |
| 45.55 | 0.316 | 8.23 | 0.0166 | -- | 0.821 | -- | -- | 0.299 | -- | 69.16 | 51 | -- | -- |
| 41.03 | 0.298 | 8.24 | -- | 0.55 | 0.523 | -- | -- | 0.297 | 2.1 | 84.46 | 218 | -- | -- |
| 87.4 | 0.437 | 8.25 | 0.0475 | -- | -- | -- | -- | 0.235 | -- | -- | -- | -- | -- |
| 47.9 | 0.324 | 8.25 | -- | 0.83 | -- | -- | -- | 0.212 | 3 | -- | -- | -- | -- |
| 45.36 | 0.314 | 8.24 | -- | -- | 0.833 | -- | -- | 0.284 | -- | 68 | 9 | -- | -- |
| 87.46 | 0.437 | 8.25 | -- | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.02 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 2 | 37.10 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 15 | 15 |
| 4 | 37.46 | humidity | 90.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 5 | 37.50 | radiation | 1.0 | 270 | > th | dose independent | sin | 2 | NA |
| 6 | 37.51 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 2 |
| 8 | 37.61 | humidity | 90.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 13 | 37.73 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 15 | 37.76 | radiation | 1.0 | 270 | < th | dose independent | sin | 3 | NA |
| 19 | 37.80 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 17 |
| 21 | 37.84 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 29 | 37.97 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 13 | 5 |
| 30 | 37.98 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 33 | 38.03 | radiation | 1.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 35 | 38.03 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 38 | 38.05 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 13 | 7 |
| 41 | 38.05 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 13 | 11 |
| 65 | 38.16 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 3 | 20 |
| 67 | 38.17 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 105 | 38.39 | radiation | 1.0 | 720 | < th | dose independent | sin | 20 | NA |
| 129 | 38.48 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 17 | NA |
| 130 | 38.48 | radiation | 1.0 | 720 | < th | dose dependent | sin | 21 | NA |
| 152 | 38.54 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 160 | 38.55 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 10 | 21 |
| 161 | 38.56 | radiation | 1.0 | 720 | > th | dose independent | sin | 14 | NA |
| 169 | 38.59 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 184 | 38.64 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 187 | 38.65 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 190 | 38.65 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 24 | 20 |
| 200 | 38.67 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 14 |
| 205 | 38.67 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 10 | 20 |
| 221 | 38.72 | humidity | 80.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 229 | 38.74 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 242 | 38.75 | radiation | 1.0 | 720 | > th | dose independent | rect. | 14 | 16 |
| 255 | 38.78 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 273 | 38.82 | radiation | 1.0 | 720 | > th | dose independent | sin | 21 | NA |
| 275 | 38.83 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 6 |
| 296 | 38.87 | humidity | 80.0 | 1440 | > th | dose independent | sin | 1 | NA |
| 330 | 38.91 | humidity | 80.0 | 1440 | < th | dose independent | sin | 2 | NA |
| 346 | 38.93 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 348 | 38.93 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 404 | 38.99 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 22 |
| 415 | 39.01 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 1 |
| 444 | 39.04 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 448 | 39.05 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 15 |
| 501 | 39.08 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 510 | 39.09 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 519 | 39.10 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 553 | 39.13 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 22 |
| 565 | 39.14 | humidity | 90.0 | 720 | < th | dose dependent | sin | 20 | NA |
| 622 | 39.19 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 17 | 16 |
| 627 | 39.20 | humidity | 90.0 | 270 | < th | dose independent | rect. | 19 | 18 |
| 629 | 39.20 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 8 | 16 |
| 634 | 39.21 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 8 | 14 |
| 656 | 39.23 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 22 |
| 670 | 39.24 | humidity | 50.0 | 720 | > th | dose dependent | sin | 16 | NA |
| 673 | 39.24 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 6 | 16 |
| 688 | 39.25 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 6 |
| 701 | 39.26 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 12 | 9 |
| 710 | 39.27 | humidity | 90.0 | 270 | < th | dose independent | rect. | 17 | 22 |
| 711 | 39.27 | radiation | 1.0 | 720 | > th | dose independent | rect. | 8 | 23 |
| 722 | 39.28 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 14 | 7 |
| 763 | 39.30 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 765 | 39.30 | humidity | 80.0 | 270 | > th | dose dependent | no | NA | NA |
| 782 | 39.30 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 814 | 39.31 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 849 | 39.33 | radiation | 1.0 | 720 | < th | dose independent | rect. | 20 | 23 |
| 874 | 39.34 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 911 | 39.37 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 23 |
| 921 | 39.37 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 997 | 39.42 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 2 |