BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0182400 Os11g0182400|AK112089
         (438 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52030.1  | chr3:19301872-19304227 FORWARD LENGTH=455          346   2e-95

>AT3G52030.1 | chr3:19301872-19304227 FORWARD LENGTH=455
          Length = 454

 Score =  346 bits (887), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 174/431 (40%), Positives = 259/431 (60%), Gaps = 29/431 (6%)

Query: 31  TAQALNDDTLRSVFSRLDDHFDLARCSTVCNSWNRVIDTAHLM----RDLYY-KRNPQAR 85
           + ++L+ D L  +FS LD  FDL  C+ VCNSWN VI    L+    R +++   +  + 
Sbjct: 22  SIESLDADILCIIFSFLD-LFDLVHCTVVCNSWNAVIKRLKLLQASCRKMHHLGSDSPSS 80

Query: 86  SSGSNTSIKSYFKELALDEHASSFSRGPAEVYQWIGHPNQATICRMKSGSILTGVGDKTL 145
           S+  +   +   ++ A+  H  +  RG  E+ +W  H ++ + CRMK G +LTGVGDK +
Sbjct: 81  STSLDRPAEIDVEDFAMKHHKMALLRGRIEIERWEAHSHRVSQCRMKKGLLLTGVGDKVM 140

Query: 146 RLWSAESCKYMNEYIVPSSKMLVNFDFDENKIVGLTS---------------------SQ 184
           RLWS +S K M EY +P +  L++FDFDE+K + + S                     ++
Sbjct: 141 RLWSLKSYKCMEEYSLPDASSLIDFDFDESKKLEVVSLAWEYFDSVVVVVVEIVGLVGTR 200

Query: 185 LCIWRRSEPRSIFQSRGASFNRGLCMSYADPEVIIGCEDGRAFVYDMYSRSCSSIYRLHS 244
           + IWRR+  RSIF SR  +F +GLCM Y DPE ++GCEDG A V+DMYS++CS I R   
Sbjct: 201 ISIWRRNGQRSIFPSRAGTFPKGLCMRYIDPEAVVGCEDGTARVFDMYSKTCSQIIRTQG 260

Query: 245 SPLTCLTITDDQLIAAGSTFGNVAIADQTSGQKLGVLKSAFAPTAIRCLSFSTSGHLIFA 304
            P+TCL+++D+QL  +GS+ G V ++D    Q +  LKS      I+ + F+   +L F 
Sbjct: 261 GPITCLSLSDNQLFLSGSSLGRVTVSDPLMDQPVATLKSTITAGGIQTICFNQGTNLAFI 320

Query: 305 GSSAGYAHCWDLRTLRPLWEKRVSPNVIYSAHHLPGDTATLAVGGIDGVLRLICQRTGET 364
           G++ GY  CWDLR +  LWEKRVSPNV+YS   L  DT+ +  GGIDGVLR+I Q++G  
Sbjct: 321 GTTGGYVSCWDLRKMDRLWEKRVSPNVVYSIQQLRNDTSVMVAGGIDGVLRMIDQKSGRV 380

Query: 365 IRSFIVNADRPAASSSHQQV--EKKSVRQVAPNARLDNIPTRLRPQITCLAVGMKKIVTT 422
           +   I++      S+ + QV  EK+  ++V+ +  +D I  ++RPQI+C+A+GMKK+VT 
Sbjct: 381 LSRVIMDDKFSTTSTRNNQVVIEKRRGKRVSQDMEIDKIERKVRPQISCIAMGMKKMVTA 440

Query: 423 HGENYIRVWKF 433
           H    I VWKF
Sbjct: 441 HNGKCISVWKF 451



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.132    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,222,796
Number of extensions: 378128
Number of successful extensions: 1282
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1289
Number of HSP's successfully gapped: 3
Length of query: 438
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 336
Effective length of database: 8,310,137
Effective search space: 2792206032
Effective search space used: 2792206032
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)