BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0182400 Os11g0182400|AK112089
         (438 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0182400  Cyclin-like F-box domain containing protein         850   0.0  

>Os11g0182400 Cyclin-like F-box domain containing protein
          Length = 438

 Score =  850 bits (2197), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/408 (100%), Positives = 408/408 (100%)

Query: 31  TAQALNDDTLRSVFSRLDDHFDLARCSTVCNSWNRVIDTAHLMRDLYYKRNPQARSSGSN 90
           TAQALNDDTLRSVFSRLDDHFDLARCSTVCNSWNRVIDTAHLMRDLYYKRNPQARSSGSN
Sbjct: 31  TAQALNDDTLRSVFSRLDDHFDLARCSTVCNSWNRVIDTAHLMRDLYYKRNPQARSSGSN 90

Query: 91  TSIKSYFKELALDEHASSFSRGPAEVYQWIGHPNQATICRMKSGSILTGVGDKTLRLWSA 150
           TSIKSYFKELALDEHASSFSRGPAEVYQWIGHPNQATICRMKSGSILTGVGDKTLRLWSA
Sbjct: 91  TSIKSYFKELALDEHASSFSRGPAEVYQWIGHPNQATICRMKSGSILTGVGDKTLRLWSA 150

Query: 151 ESCKYMNEYIVPSSKMLVNFDFDENKIVGLTSSQLCIWRRSEPRSIFQSRGASFNRGLCM 210
           ESCKYMNEYIVPSSKMLVNFDFDENKIVGLTSSQLCIWRRSEPRSIFQSRGASFNRGLCM
Sbjct: 151 ESCKYMNEYIVPSSKMLVNFDFDENKIVGLTSSQLCIWRRSEPRSIFQSRGASFNRGLCM 210

Query: 211 SYADPEVIIGCEDGRAFVYDMYSRSCSSIYRLHSSPLTCLTITDDQLIAAGSTFGNVAIA 270
           SYADPEVIIGCEDGRAFVYDMYSRSCSSIYRLHSSPLTCLTITDDQLIAAGSTFGNVAIA
Sbjct: 211 SYADPEVIIGCEDGRAFVYDMYSRSCSSIYRLHSSPLTCLTITDDQLIAAGSTFGNVAIA 270

Query: 271 DQTSGQKLGVLKSAFAPTAIRCLSFSTSGHLIFAGSSAGYAHCWDLRTLRPLWEKRVSPN 330
           DQTSGQKLGVLKSAFAPTAIRCLSFSTSGHLIFAGSSAGYAHCWDLRTLRPLWEKRVSPN
Sbjct: 271 DQTSGQKLGVLKSAFAPTAIRCLSFSTSGHLIFAGSSAGYAHCWDLRTLRPLWEKRVSPN 330

Query: 331 VIYSAHHLPGDTATLAVGGIDGVLRLICQRTGETIRSFIVNADRPAASSSHQQVEKKSVR 390
           VIYSAHHLPGDTATLAVGGIDGVLRLICQRTGETIRSFIVNADRPAASSSHQQVEKKSVR
Sbjct: 331 VIYSAHHLPGDTATLAVGGIDGVLRLICQRTGETIRSFIVNADRPAASSSHQQVEKKSVR 390

Query: 391 QVAPNARLDNIPTRLRPQITCLAVGMKKIVTTHGENYIRVWKFRPKSS 438
           QVAPNARLDNIPTRLRPQITCLAVGMKKIVTTHGENYIRVWKFRPKSS
Sbjct: 391 QVAPNARLDNIPTRLRPQITCLAVGMKKIVTTHGENYIRVWKFRPKSS 438



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.132    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,469,943
Number of extensions: 593248
Number of successful extensions: 1753
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1754
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 334
Effective length of database: 11,605,545
Effective search space: 3876252030
Effective search space used: 3876252030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)