Os11g0169600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os11g0169600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.17 | 0.164 | 12.2 | 0.534 | 0.498 | -0.372 | 0.0805 | 1.19 | 0.21 | 1.51 | 22.12 | 1559 | -- | -- |
| 12.92 | 0.169 | 12.2 | 0.152 | 0.331 | -0.44 | -0.00809 | -- | 0.112 | 1.08 | 22.12 | 1559 | -- | -- |
| 12.18 | 0.163 | 12.2 | 0.535 | 0.504 | -0.366 | -- | 1.19 | 0.208 | 1.56 | 22.4 | 1510 | -- | -- |
| 12.89 | 0.168 | 12.2 | 0.151 | 0.331 | -0.441 | -- | -- | 0.111 | 1.05 | 22.4 | 1510 | -- | -- |
| 17.03 | 0.193 | 12.2 | 0.352 | -- | -0.786 | -- | 0.867 | 0.201 | -- | 22.41 | 1665 | -- | -- |
| 16 | 0.187 | 12.2 | 0.066 | 0.493 | -- | 0.0783 | -- | 0.0419 | 1.57 | -- | -- | -- | -- |
| 16.02 | 0.187 | 12.2 | 0.0634 | 0.493 | -- | -- | -- | 0.0414 | 1.58 | -- | -- | -- | -- |
| 17.62 | 0.196 | 12.2 | 0.216 | -- | -0.73 | -- | -- | 0.16 | -- | 22.41 | 1665 | -- | -- |
| 13.46 | 0.172 | 12.2 | -- | 0.35 | -0.395 | -- | -- | 0.0878 | 1.14 | 22.4 | 1510 | -- | -- |
| 30.89 | 0.26 | 12.2 | 0.0832 | -- | -- | -- | -- | 0.0522 | -- | -- | -- | -- | -- |
| 16.13 | 0.188 | 12.2 | -- | 0.494 | -- | -- | -- | 0.0343 | 1.58 | -- | -- | -- | -- |
| 18.81 | 0.203 | 12.2 | -- | -- | -0.69 | -- | -- | 0.131 | -- | 22.41 | 1665 | -- | -- |
| 31.08 | 0.26 | 12.2 | -- | -- | -- | -- | -- | 0.043 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.98 | temperature | 25 | 1440 | > th | dose independent | rect. | 9 | 13 |
| 11 | 12.07 | temperature | 25 | 1440 | < th | dose independent | rect. | 9 | 14 |
| 13 | 12.08 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 20 | 12.10 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 24 | 12.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 27 | 12.13 | temperature | 25 | 1440 | > th | dose independent | sin | 20 | NA |
| 38 | 12.14 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 8 |
| 49 | 12.15 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 57 | 12.16 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 69 | 12.16 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 85 | 12.18 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 100 | 12.19 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 113 | 12.20 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 127 | 12.20 | temperature | 20 | 1440 | > th | dose dependent | sin | 18 | NA |
| 133 | 12.21 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 258 | 12.28 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 277 | 12.28 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 17 |
| 278 | 12.28 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 17 |
| 284 | 12.29 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 316 | 12.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 373 | 12.32 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 381 | 12.32 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 17 |
| 390 | 12.33 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 5 |
| 411 | 12.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 15 |
| 412 | 12.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 462 | 12.35 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 2 |
| 471 | 12.35 | radiation | 1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 540 | 12.37 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 542 | 12.37 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 5 |
| 543 | 12.37 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 6 |
| 580 | 12.38 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 581 | 12.38 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 602 | 12.38 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 632 | 12.39 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 648 | 12.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 650 | 12.39 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 4 |
| 688 | 12.40 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 689 | 12.40 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 703 | 12.40 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 709 | 12.40 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 741 | 12.40 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 744 | 12.41 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 753 | 12.41 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 12 | 5 |
| 869 | 12.43 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 987 | 12.44 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 18 |