BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0169600 Os11g0169600|J100085M11
(428 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G64090.1 | chr5:25648069-25649415 FORWARD LENGTH=449 192 3e-49
AT5G21050.1 | chr5:7147890-7148957 FORWARD LENGTH=356 140 1e-33
>AT5G64090.1 | chr5:25648069-25649415 FORWARD LENGTH=449
Length = 448
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 116/301 (38%), Positives = 149/301 (49%), Gaps = 33/301 (10%)
Query: 135 GFEAVLLAVYSSEAKNRQGKPVLVQVPDLSVPSLYHTXXXXXXXXXXXXXXXXXXXXXAG 194
GFEAVLLA+Y++E K R GKP+LV +PDLS PSLYHT
Sbjct: 174 GFEAVLLAIYAAEVKARAGKPILVHIPDLSQPSLYHTPRNGVDKSRDSNPTAS------- 226
Query: 195 NVVVGVLSPPLEPQAAVKSTKRAGIIGVAFEAYYAKISQMPPASKVDACNAVAAWAGQYC 254
VGVLSP LEPQ AVKSTKRA I+GV + Y+ +ISQMP SK++ C A+WAGQ C
Sbjct: 227 ---VGVLSPQLEPQIAVKSTKRASIVGVGLQCYFKEISQMPAWSKLEFCKFSASWAGQDC 283
Query: 255 KCRFXXXXXXXXX-XXADSLGSVSPLSSEAENGKALEEEMAKM--RVNGDTNGRN----C 307
C+ + G S + + +EE+ ++ R N + N
Sbjct: 284 DCKEKIDEDEDKVLALTNGFGDSSSFNGSSGRSLEIEEDFDRLAIRENEEQLSSNGGGGG 343
Query: 308 GEREGRVPLPWELLQPVMRVLGHCLLAPLNPTEVRDTXXXXXXXXXXXXCHELVPQAILA 367
R R+PLPWEL QP +R+LGHCLL+PLN +V+D H+L PQAILA
Sbjct: 344 VGRGVRIPLPWELFQPTLRILGHCLLSPLNTEDVKDAASNAVRSLYARASHDLNPQAILA 403
Query: 368 SRSLIELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPNTPGKQRKPDVLLLS 427
+RSL+ LD NTP K +KP++LL S
Sbjct: 404 TRSLVNLDTSARTSGKTVAAETVNGSSNV----------------NTPSKAKKPEILLAS 447
Query: 428 K 428
K
Sbjct: 448 K 448
>AT5G21050.1 | chr5:7147890-7148957 FORWARD LENGTH=356
Length = 355
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 125/242 (51%), Gaps = 38/242 (15%)
Query: 135 GFEAVLLAVYSSEAKNRQGKPVLVQVPDLSVPSLYHTXXXXXXXXXXXXXXXXXXXXXAG 194
GFEAVLLA+Y+ E +R G+ + V +PDLS PS+YH
Sbjct: 126 GFEAVLLALYAHETTSRAGQAITVNIPDLSYPSIYHESKGLTRNNNSTC----------- 174
Query: 195 NVVVGVLSPPLEPQAAVKSTKRAGIIGVAFEAYYAKISQMPPASKVDACNAVAAWAGQYC 254
+ + V+S L+P V+ST+RA I+GVA E YY+KIS+MP SK++ C + WAGQ
Sbjct: 175 -LNIAVISSTLDPHGTVRSTRRARIVGVALELYYSKISKMPRESKLNFCESCEKWAGQNG 233
Query: 255 KCRFXXXXXXXXXXXADSLGSVSPLSSEAENGKALEEEMAKMRVNGDTNGRNCGERE-GR 313
+ S + LS ++ EEE N GR+ ER+ GR
Sbjct: 234 ETE------------QSSRAVIPTLSDDSWR----EEE------NVAIGGRS--ERDSGR 269
Query: 314 VPLPWELLQPVMRVLGHCLLA-PLNPTEVRDTXXXXXXXXXXXXCHELVPQAILASRSLI 372
+PLPWELLQP++R+LGHCLL + E+ + H++ P+AILA+ SL+
Sbjct: 270 IPLPWELLQPILRILGHCLLGLKMEDRELSEAANKACQSLYLRSLHDINPKAILATGSLL 329
Query: 373 EL 374
L
Sbjct: 330 RL 331
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.132 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,111,046
Number of extensions: 147819
Number of successful extensions: 283
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 278
Number of HSP's successfully gapped: 2
Length of query: 428
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 327
Effective length of database: 8,337,553
Effective search space: 2726379831
Effective search space used: 2726379831
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)