BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os11g0169600 Os11g0169600|J100085M11
         (428 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os11g0169600  Conserved hypothetical protein                      444   e-125
Os03g0722000  Conserved hypothetical protein                       96   7e-20

>Os11g0169600 Conserved hypothetical protein
          Length = 428

 Score =  444 bits (1141), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/401 (60%), Positives = 244/401 (60%)

Query: 28  WWESVSQARSRILALSSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 87
           WWESVSQARSRILALSSI                                          
Sbjct: 28  WWESVSQARSRILALSSILPAPADSDVAALADSDRPARALLRSSAAYVALSAALRSGGGA 87

Query: 88  DDPACHWLYDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGFEAVLLAVYSSE 147
           DDPACHWLYDT                                    GFEAVLLAVYSSE
Sbjct: 88  DDPACHWLYDTLLSPDPDLRLAALAFLPLLSSLYLLRLPPALPSSLSGFEAVLLAVYSSE 147

Query: 148 AKNRQGKPVLVQVPDLSVPSLYHTXXXXXXXXXXXXXXXXXXXXXAGNVVVGVLSPPLEP 207
           AKNRQGKPVLVQVPDLSVPSLYHT                     AGNVVVGVLSPPLEP
Sbjct: 148 AKNRQGKPVLVQVPDLSVPSLYHTPLSSPSSKSPRRPQPPPIPPPAGNVVVGVLSPPLEP 207

Query: 208 QAAVKSTKRAGIIGVAFEAYYAKISQMPPASKVDACNAVAAWAGQYCKCRFXXXXXXXXX 267
           QAAVKSTKRAGIIGVAFEAYYAKISQMPPASKVDACNAVAAWAGQYCKCRF         
Sbjct: 208 QAAVKSTKRAGIIGVAFEAYYAKISQMPPASKVDACNAVAAWAGQYCKCRFELDEKELEE 267

Query: 268 XXADSLGSVSPLSSEAENGKALEEEMAKMRVNGDTNGRNCGEREGRVPLPWELLQPVMRV 327
             ADSLGSVSPLSSEAENGKALEEEMAKMRVNGDTNGRNCGEREGRVPLPWELLQPVMRV
Sbjct: 268 EEADSLGSVSPLSSEAENGKALEEEMAKMRVNGDTNGRNCGEREGRVPLPWELLQPVMRV 327

Query: 328 LGHCLLAPLNPTEVRDTXXXXXXXXXXXXCHELVPQAILASRSLIELDXXXXXXXXXXXX 387
           LGHCLLAPLNPTEVRDT            CHELVPQAILASRSLIELD            
Sbjct: 328 LGHCLLAPLNPTEVRDTAAEAVRVVYARACHELVPQAILASRSLIELDKSARKAAKEAAA 387

Query: 388 XXXXXXXXXXXXXXXXXXXXXXXKPNTPGKQRKPDVLLLSK 428
                                  KPNTPGKQRKPDVLLLSK
Sbjct: 388 AASGAIVSVGTAGSTASSSRPSSKPNTPGKQRKPDVLLLSK 428



>Os03g0722000 Conserved hypothetical protein
          Length = 337

 Score = 95.5 bits (236), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 109/241 (45%), Gaps = 50/241 (20%)

Query: 135 GFEAVLLAVYSSEAKNR-QGKPVLVQVPDLSVPSLYHTXXXXXXXXXXXXXXXXXXXXXA 193
           GFEAVLLA+Y+  A  R  G+   V +P+L+ PS+YH                      A
Sbjct: 110 GFEAVLLALYAHAAAQRGSGEAETVSLPNLANPSVYHDAKVPPKTK-------------A 156

Query: 194 GNVVVGVLSPPLEPQAAVKSTKRAGIIGVAFEAYYAKISQMPPASKVDACNAVAAWAGQY 253
             + V VLSP LEP   +++T+RA I+G   E Y+ K++ MP +SK++ C    AW G  
Sbjct: 157 AELDVAVLSPALEPHGTMRATRRARIVGAVLELYHGKLAIMPLSSKMEFCEFCVAWTGNR 216

Query: 254 CKCRFXXXXXXXXXXXADSLGSVSPLSSEAENGKALEEEMAKMRVNGDTNGRNCGEREGR 313
            K                                 L++   K RV   +      E+  R
Sbjct: 217 SK---------------------------------LDD---KPRVAAASEPAAAEEKLRR 240

Query: 314 VPLPWELLQPVMRVLGHCLLAPLNPTEVRDTXXXXXXXXXXXXCHELVPQAILASRSLIE 373
           VPLPWEL QPV+R++ HCLL P N  E++                 +  +++LA+RSL+ 
Sbjct: 241 VPLPWELFQPVLRIVAHCLLGPTNSDELKTQATRAAECMYWRAAETMDARSVLATRSLVR 300

Query: 374 L 374
           L
Sbjct: 301 L 301



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.132    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,315,587
Number of extensions: 247413
Number of successful extensions: 481
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 2
Length of query: 428
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 324
Effective length of database: 11,605,545
Effective search space: 3760196580
Effective search space used: 3760196580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)