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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0153200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Carbonic anhydrase, eukaryotic family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.88 (0.0295) R2 : 0.162
β1 : -0.183 (0.108) R2dD : 0.00564 R2D : 0.000913
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.63 (0.641) R2dE : 0.709 R2E : -0.303
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -10.6 (1.54) R2dD*E : 0.428 R2D*E : -0.543
γ1 : 0.171 (0.0623) R2dN8 : 0.0185 R2N8 : 0.00677
σ : 0.545
deviance : 137.04
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.8791
memory length : 25
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11
open length of G : 0.833

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
137 0.55 2.88 -0.18 0.0153 4.86 0.359 -9.11 0.173 7.56 0.9343 26 11 0.817
157.87 0.585 2.85 -0.102 0.0268 1.55 -0.533 -- 0.134 5.09 1.244 14 10.9 1.28
136.94 0.545 2.89 -0.185 0.0518 5.68 -- -10.7 0.167 4.04 0.8767 25 11 0.817
154.38 0.579 2.85 -0.18 0.0444 1.21 -- -- 0.158 4.94 1.8 25 11.1 1.4
137.04 0.545 2.88 -0.183 -- 5.63 -- -10.6 0.171 -- 0.8791 25 11 0.833
161.04 0.595 2.86 -0.0736 0.068 -- 0.337 -- 0.138 9.16 -- -- -- --
161.42 0.595 2.85 -0.0609 0.0677 -- -- -- 0.139 10.3 -- -- -- --
153.77 0.578 2.85 -0.165 -- 1.27 -- -- 0.16 -- 1.836 46 11.2 1.86
155.21 0.58 2.85 -- 0.04 1.13 -- -- 0.175 3.91 1.8 25 11.2 1.19
161.7 0.594 2.86 -0.0619 -- -- -- -- 0.139 -- -- -- -- --
161.52 0.594 2.85 -- 0.0681 -- -- -- 0.146 10.3 -- -- -- --
154.45 0.579 2.85 -- -- 1.21 -- -- 0.176 -- 1.8 46 11.2 1.95
161.8 0.594 2.86 -- -- -- -- -- 0.146 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 146.50 wind 1 30 < th dose dependent rect. 11 1
2 147.89 wind 9 90 > th dose dependent rect. 21 5
10 147.92 wind 9 270 > th dose independent rect. 21 13
11 148.01 wind 9 90 > th dose independent rect. 21 5
54 148.48 wind 9 270 > th dose independent rect. 21 1
56 148.48 wind 9 270 > th dose dependent rect. 21 1
59 148.51 wind 5 90 > th dose dependent rect. 21 5
198 150.08 wind 1 30 < th dose independent rect. 11 1
202 150.31 wind 1 270 < th dose dependent rect. 8 1
314 151.78 wind 7 270 > th dose dependent sin 10 NA
339 151.96 wind 9 30 > th dose independent sin 9 NA
407 152.52 wind 1 270 < th dose dependent rect. 8 4
408 152.53 wind 7 270 > th dose independent sin 10 NA
414 152.55 wind 9 30 < th dose independent sin 9 NA
428 152.63 temperature 20 270 < th dose dependent rect. 8 2
447 152.77 wind 1 270 < th dose independent rect. 8 1
473 152.90 radiation 30 30 < th dose independent rect. 11 1
561 153.10 radiation 10 270 < th dose dependent rect. 8 1
562 153.10 radiation 10 270 < th dose dependent rect. 8 3
607 153.30 wind 7 270 < th dose independent sin 10 NA
614 153.32 temperature 25 90 < th dose dependent rect. 10 1
655 153.59 radiation 20 90 < th dose dependent rect. 10 1
681 153.67 radiation 10 270 < th dose independent rect. 8 3
754 154.01 wind 9 30 > th dose independent rect. 1 10
758 154.01 wind 9 30 > th dose dependent rect. 1 10
762 154.02 wind 5 90 > th dose independent rect. 1 1
769 154.02 wind 5 90 > th dose dependent rect. 1 1
800 154.09 wind 3 10 > th dose dependent rect. 2 1
846 154.27 wind 9 720 > th dose dependent rect. 14 22