BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0153200 Os11g0153200|AK107061
(182 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G52720.1 | chr3:19538804-19541116 REVERSE LENGTH=285 155 2e-38
AT1G08080.1 | chr1:2517022-2518546 REVERSE LENGTH=276 143 5e-35
AT4G20990.1 | chr4:11219772-11221126 FORWARD LENGTH=268 135 8e-33
AT5G04180.1 | chr5:1147907-1149237 REVERSE LENGTH=278 133 4e-32
AT1G08065.1 | chr1:2511788-2513341 REVERSE LENGTH=278 129 1e-30
AT2G28210.1 | chr2:12029997-12032338 FORWARD LENGTH=218 121 2e-28
AT4G21000.1 | chr4:11222529-11223756 FORWARD LENGTH=261 109 8e-25
AT5G56330.1 | chr5:22813768-22816162 FORWARD LENGTH=351 80 9e-16
>AT3G52720.1 | chr3:19538804-19541116 REVERSE LENGTH=285
Length = 284
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 106/164 (64%), Gaps = 4/164 (2%)
Query: 12 GTVTVNGKVYSFRRVHWHAPSEHTINGEKHPLELQMVHAAADGSLAVIAILYKYGAPDSF 71
G V + K Y+ ++HWH PSEH ++G ++ EL MVH A DGS AV+A L+K G + F
Sbjct: 104 GDVIIENKNYTLLQMHWHTPSEHHLHGVQYAAELHMVHQAKDGSFAVVASLFKIGTEEPF 163
Query: 72 YFQLKRKLAELAADGCSFGEENAQVALGLVHLRSLQKRTGSYFRYAGSLTAPPCTEDVFW 131
Q+K KL +L + G AQV +G + R ++++T Y+RY GSLT PPC+E+V W
Sbjct: 164 LSQMKEKLVKLKEERLK-GNHTAQVEVGRIDTRHIERKTRKYYRYIGSLTTPPCSENVSW 222
Query: 132 SVLGKIRQISQEQVALITALLPA---GGARPTQPLNGRTVQFYN 172
++LGK+R +S+EQV L+ + L +RP QPLNGR V+ ++
Sbjct: 223 TILGKVRSMSKEQVELLRSPLDTSFKNNSRPCQPLNGRRVEMFH 266
>AT1G08080.1 | chr1:2517022-2518546 REVERSE LENGTH=276
Length = 275
Score = 143 bits (360), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/173 (39%), Positives = 105/173 (60%), Gaps = 10/173 (5%)
Query: 4 MEFEPDKVGTVTVNGKVYSFRRVHWHAPSEHTINGEKHPLELQMVHAAADGSLAVIAILY 63
++FE D GT+ +NG Y +++HWH+PSEHTING + LEL MVH + +AV+ +LY
Sbjct: 108 LKFE-DGAGTIKINGFEYELQQLHWHSPSEHTINGRRFALELHMVHEGRNRRMAVVTVLY 166
Query: 64 KYGAPDSFYFQLKRKLAELAADGCSFGEENAQVALGLVHLRSLQKRTGSYFRYAGSLTAP 123
K G D+F L+++L +A E A+ +G++ ++ + Y+RY GSLT P
Sbjct: 167 KIGRADTFIRSLEKELEGIAE------MEEAEKNVGMIDPTKIKIGSRKYYRYTGSLTTP 220
Query: 124 PCTEDVFWSVLGKIRQISQEQVALITALL---PAGGARPTQPLNGRTVQFYNP 173
PCT++V WSV+ K+R ++++QV L+ + ARP QP N R V Y P
Sbjct: 221 PCTQNVTWSVVRKVRTVTRKQVKLLRVAVHDDANSNARPVQPTNKRIVHLYRP 273
>AT4G20990.1 | chr4:11219772-11221126 FORWARD LENGTH=268
Length = 267
Score = 135 bits (341), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 99/165 (60%), Gaps = 12/165 (7%)
Query: 12 GTVTVNGKVYSFRRVHWHAPSEHTINGEKHPLELQMVHAAADGSLAVIAILYKYGAPDSF 71
G +T+ ++ + HWH+PSEHT+NG ++ LEL MVH +A G AVI +LYK G P+ F
Sbjct: 110 GKMTIRKTDFNLVQCHWHSPSEHTVNGTRYDLELHMVHTSARGRTAVIGVLYKLGEPNEF 169
Query: 72 YFQLKRKLAELAADGCSFGEENAQVALGLVHLRSLQKRTGSYFRYAGSLTAPPCTEDVFW 131
L + L + A G N ++ LG++ R ++ +T ++RY GSLT PPCTE V W
Sbjct: 170 ---LTKLLNGIKAVG------NKEINLGMIDPREIRFQTRKFYRYIGSLTVPPCTEGVIW 220
Query: 132 SVLGKIRQISQEQVALITALLPAG---GARPTQPLNGRTVQFYNP 173
+V+ ++ IS EQ+ + + G +RP Q GR+V FY+P
Sbjct: 221 TVVKRVNTISMEQITALRQAVDDGFETNSRPVQDSKGRSVWFYDP 265
>AT5G04180.1 | chr5:1147907-1149237 REVERSE LENGTH=278
Length = 277
Score = 133 bits (335), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/163 (37%), Positives = 98/163 (60%), Gaps = 9/163 (5%)
Query: 9 DKVGTVTVNGKVYSFRRVHWHAPSEHTINGEKHPLELQMVHAAADGSLAVIAILYKYGAP 68
D G + +N Y + HWHAPSEH ++G++ +EL MVH + +G LAVI +L++ G P
Sbjct: 99 DDAGKIVINDTDYKLVQSHWHAPSEHFLDGQRLAMELHMVHKSVEGHLAVIGVLFREGEP 158
Query: 69 DSFYFQLKRKLAELAADGCSFGEENAQVALGLVHLRSLQKRTGSYFRYAGSLTAPPCTED 128
++F ++ K+ ++A ++ +V++G + R ++ Y GSLT PPCTED
Sbjct: 159 NAFISRIMDKIHKIA------DVQDGEVSIGKIDPREFGWDLTKFYEYRGSLTTPPCTED 212
Query: 129 VFWSVLGKIRQISQEQVALITALLPAG---GARPTQPLNGRTV 168
V W+++ K+ +S+EQ+ ++T G ARP QPLNGR V
Sbjct: 213 VMWTIINKVGTVSREQIDVLTDARRGGYEKNARPAQPLNGRLV 255
>AT1G08065.1 | chr1:2511788-2513341 REVERSE LENGTH=278
Length = 277
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 98/174 (56%), Gaps = 10/174 (5%)
Query: 4 MEFEPDKVGT-VTVNGKVYSFRRVHWHAPSEHTINGEKHPLELQMVHAAADGSLAVIAIL 62
M+FE G +T+NG Y +++HWH+PSEHT+NG++ LE MVH + DG AV+A
Sbjct: 103 MKFEGGNAGLGITINGTEYKLQQIHWHSPSEHTLNGKRFVLEEHMVHQSKDGRNAVVAFF 162
Query: 63 YKYGAPDSFYFQLKRKLAELAADGCSFGEENAQVALGLVHLRSLQKRTGSYFRYAGSLTA 122
YK G PD F L+R L + +Q + +VH R+ + Y+R+ GSLT
Sbjct: 163 YKLGKPDYFLLTLERYLKRIT------DTHESQEFVEMVHPRTFGFESKHYYRFIGSLTT 216
Query: 123 PPCTEDVFWSVLGKIRQISQEQVALITALL---PAGGARPTQPLNGRTVQFYNP 173
PPC+E+V W++ ++R ++ +Q+ ++ + ARP Q N R V Y P
Sbjct: 217 PPCSENVIWTISKEMRTVTLKQLIMLRVTVHDQSNSNARPLQRKNERPVALYIP 270
>AT2G28210.1 | chr2:12029997-12032338 FORWARD LENGTH=218
Length = 217
Score = 121 bits (303), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 86/134 (64%), Gaps = 6/134 (4%)
Query: 4 MEFEPDKVGTVTVNGKVYSFRRVHWHAPSEHTINGEKHPLELQMVHAAADGSLAVIAILY 63
++F + G++TVNG Y ++HWH+PSEHT+NG + LEL MVH +GSLAV+ +LY
Sbjct: 79 LKFGEEGSGSITVNGTEYKLLQLHWHSPSEHTMNGRRFALELHMVHENINGSLAVVTVLY 138
Query: 64 KYGAPDSFYFQLKRKLAELAADGCSFGEENAQVALGLVHLRSLQKRTGSYFRYAGSLTAP 123
K G PDSF L+ KL+ + + A+ + ++ R ++ + ++RY GSLT P
Sbjct: 139 KIGRPDSFLGLLENKLSAIT------DQNEAEKYVDVIDPRDIKIGSRKFYRYIGSLTTP 192
Query: 124 PCTEDVFWSVLGKI 137
PCT++V W+V+ K+
Sbjct: 193 PCTQNVIWTVVKKV 206
>AT4G21000.1 | chr4:11222529-11223756 FORWARD LENGTH=261
Length = 260
Score = 109 bits (273), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 74/126 (58%), Gaps = 9/126 (7%)
Query: 12 GTVTVNGKVYSFRRVHWHAPSEHTINGEKHPLELQMVHAAADGSLAVIAILYKYGAPDSF 71
G +T++ Y + HWH+PSEHTING + LEL MVH +A G V+ +LYK G PD F
Sbjct: 111 GKITIHQTDYKLVQCHWHSPSEHTINGTSYDLELHMVHTSASGKTTVVGVLYKLGEPDEF 170
Query: 72 YFQLKRKLAELAADGCSFGEENAQVALGLVHLRSLQKRTGSYFRYAGSLTAPPCTEDVFW 131
L + L + G ++ LG+V R ++ T +++RY GSLT PPCTE V W
Sbjct: 171 ---LTKILNGIKGVG------KKEIDLGIVDPRDIRFETNNFYRYIGSLTIPPCTEGVIW 221
Query: 132 SVLGKI 137
+V ++
Sbjct: 222 TVQKRV 227
>AT5G56330.1 | chr5:22813768-22816162 FORWARD LENGTH=351
Length = 350
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 71/163 (43%), Gaps = 48/163 (29%)
Query: 14 VTVNGKVYSFRRVHWHAPSEHTINGEKHPLELQMVHAAADGSLAVIAILYKYGAPDSFYF 73
VT+ G Y +++HWH+PSEHTING++ LE +VH + D AV+A LY GA D F F
Sbjct: 219 VTIRGTRYQLQQLHWHSPSEHTINGKRFALEEHLVHESKDKRYAVVAFLYNLGASDPFLF 278
Query: 74 QLKRKLAELAADGCSFGEENAQVALGLVHLRSLQKRTGSYFRYAGSLTAPPCTEDVFWSV 133
L+++L ++ S EE+
Sbjct: 279 SLEKQLKKITDTHAS--EEH---------------------------------------- 296
Query: 134 LGKIRQISQEQVALITALL---PAGGARPTQPLNGRTVQFYNP 173
IR +S +QV L+ + ARP Q +N R V Y P
Sbjct: 297 ---IRTVSSKQVKLLRVAVHDASDSNARPLQAVNKRKVYLYKP 336
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,095,862
Number of extensions: 153635
Number of successful extensions: 318
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 8
Length of query: 182
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 90
Effective length of database: 8,584,297
Effective search space: 772586730
Effective search space used: 772586730
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)