Os11g0106200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Bacterial surface antigen (D15) family protein.
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Os11g0106200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Bacterial surface antigen (D15) family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.82 | 0.318 | 10.8 | -0.203 | 1.59 | 0.208 | -0.601 | 1.26 | 0.0221 | 3.04 | 1012 | 18131 | -- | -- |
| 49.7 | 0.328 | 10.9 | -0.878 | 1.59 | 0.387 | -0.484 | -- | -0.172 | 3.08 | 1012 | 47520 | -- | -- |
| 46.96 | 0.319 | 10.8 | -0.21 | 1.59 | 0.257 | -- | 1.46 | 0.0303 | 3.06 | 1012 | 23211 | -- | -- |
| 50.7 | 0.332 | 10.9 | -0.952 | 1.59 | 0.423 | -- | -- | -0.185 | 3.08 | 1012 | 47520 | -- | -- |
| 190.05 | 0.642 | 10.8 | -0.199 | -- | 0.399 | -- | 1.65 | 0.0435 | -- | 1012 | 24386 | -- | -- |
| 52.75 | 0.34 | 10.8 | -0.574 | 1.6 | -- | -0.57 | -- | -0.0281 | 3.04 | -- | -- | -- | -- |
| 53.83 | 0.344 | 10.8 | -0.561 | 1.6 | -- | -- | -- | -0.0248 | 3.07 | -- | -- | -- | -- |
| 194.51 | 0.65 | 10.9 | -0.934 | -- | 0.518 | -- | -- | -0.198 | -- | 1009 | 47520 | -- | -- |
| 60.33 | 0.362 | 10.8 | -- | 1.58 | -0.191 | -- | -- | -0.0543 | 3.08 | 999.7 | 47520 | -- | -- |
| 199.79 | 0.66 | 10.8 | -0.493 | -- | -- | -- | -- | 0.0168 | -- | -- | -- | -- | -- |
| 62.13 | 0.369 | 10.8 | -- | 1.59 | -- | -- | -- | 0.0377 | 3.07 | -- | -- | -- | -- |
| 201.9 | 0.662 | 10.8 | -- | -- | -0.297 | -- | -- | -0.0765 | -- | 1001 | 47520 | -- | -- |
| 206.22 | 0.67 | 10.8 | -- | -- | -- | -- | -- | 0.0715 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.21 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 7 |
| 2 | 45.37 | wind | 1 | 14400 | > th | dose independent | rect. | 7 | 5 |
| 4 | 45.37 | temperature | 25 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 12 | 45.51 | temperature | 25 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 13 | 45.52 | temperature | 25 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 37 | 45.64 | radiation | 1 | 270 | > th | dose independent | sin | 23 | NA |
| 43 | 45.68 | wind | 1 | 14400 | < th | dose independent | rect. | 7 | 6 |
| 73 | 45.74 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 8 |
| 78 | 45.76 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 84 | 45.78 | temperature | 25 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 86 | 45.79 | temperature | 25 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 105 | 45.83 | temperature | 25 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 106 | 45.84 | temperature | 25 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 107 | 45.84 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 111 | 45.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 5 |
| 129 | 45.86 | humidity | 80 | 43200 | > th | dose independent | rect. | 15 | 11 |
| 143 | 45.87 | humidity | 90 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 148 | 45.88 | wind | 1 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 157 | 45.89 | humidity | 80 | 43200 | > th | dose independent | rect. | 16 | 9 |
| 159 | 45.89 | humidity | 70 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 161 | 45.90 | humidity | 80 | 43200 | > th | dose independent | sin | 15 | NA |
| 171 | 45.91 | temperature | 25 | 43200 | > th | dose independent | rect. | 21 | 10 |
| 179 | 45.92 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 16 |
| 182 | 45.93 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 186 | 45.93 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 16 |
| 187 | 45.94 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 197 | 45.94 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 20 |
| 233 | 45.97 | temperature | 25 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 235 | 45.97 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 245 | 45.99 | humidity | 80 | 43200 | < th | dose independent | sin | 15 | NA |
| 246 | 45.99 | radiation | 1 | 270 | < th | dose independent | sin | 23 | NA |
| 254 | 45.99 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 11 |
| 255 | 45.99 | temperature | 30 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 259 | 45.99 | temperature | 30 | 43200 | > th | dose dependent | rect. | 17 | 17 |
| 266 | 46.00 | temperature | 30 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 289 | 46.01 | temperature | 30 | 43200 | > th | dose independent | rect. | 17 | 17 |
| 307 | 46.02 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 331 | 46.03 | humidity | 90 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 346 | 46.04 | radiation | 1 | 10 | < th | dose dependent | rect. | 7 | 17 |
| 359 | 46.05 | radiation | 1 | 10 | < th | dose dependent | rect. | 11 | 13 |
| 374 | 46.06 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 22 |
| 383 | 46.06 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 4 | 7 |
| 409 | 46.07 | temperature | 25 | 43200 | > th | dose dependent | sin | 10 | NA |
| 411 | 46.07 | temperature | 25 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 416 | 46.07 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 5 | 5 |
| 423 | 46.07 | humidity | 90 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 441 | 46.08 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 445 | 46.08 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 493 | 46.09 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 15 |
| 647 | 46.11 | atmosphere | 1010 | 14400 | > th | dose dependent | sin | 7 | NA |
| 648 | 46.11 | atmosphere | 1010 | 14400 | > th | dose dependent | sin | 3 | NA |
| 652 | 46.11 | radiation | 1 | 270 | < th | dose dependent | sin | 23 | NA |
| 686 | 46.12 | temperature | 30 | 43200 | < th | dose independent | sin | 10 | NA |
| 687 | 46.12 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 7 | NA |
| 734 | 46.12 | humidity | 80 | 43200 | > th | dose independent | rect. | 15 | 22 |
| 746 | 46.12 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 23 | 6 |
| 777 | 46.13 | temperature | 30 | 43200 | > th | dose independent | sin | 10 | NA |
| 779 | 46.13 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 7 | NA |
| 781 | 46.13 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 5 | NA |
| 785 | 46.13 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 4 | NA |
| 805 | 46.13 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 21 | 10 |
| 882 | 46.13 | radiation | 1 | 10 | < th | dose dependent | rect. | 13 | 11 |
| 905 | 46.14 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 906 | 46.14 | temperature | 30 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 962 | 46.14 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 4 | 20 |
| 973 | 46.14 | wind | 1 | 14400 | < th | dose dependent | rect. | 11 | 1 |