BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os11g0106200 Os11g0106200|AK066650
(537 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os11g0106200 Bacterial surface antigen (D15) family protein 863 0.0
Os12g0105700 Bacterial surface antigen (D15) family protein 824 0.0
Os05g0470800 Bacterial surface antigen (D15) family protein 425 e-119
>Os11g0106200 Bacterial surface antigen (D15) family protein
Length = 537
Score = 863 bits (2230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/537 (82%), Positives = 444/537 (82%)
Query: 1 SRLLRLPIQLRSPSDHPMATASSPASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
SRLLRLPIQLRSPSDHPMATASSPASV
Sbjct: 1 SRLLRLPIQLRSPSDHPMATASSPASVQDYPDLQEDDDDDFQDDDDLDDEDEEDDDDQEP 60
Query: 61 XXXXXXXARLQSVLRRLTAEEVRIRVHDVEIRGCCRTRRAAVEAAVGSDLPXXXXXXXXX 120
ARLQSVLRRLTAEEVRIRVHDVEIRGCCRTRRAAVEAAVGSDLP
Sbjct: 61 SPSPSDEARLQSVLRRLTAEEVRIRVHDVEIRGCCRTRRAAVEAAVGSDLPRAATVRDLV 120
Query: 121 XXXXXXXXXXXXXXXFDTVSITLDAAPPGIPGNAAVIVLVDVXXXXXXXXXXLGIFANKG 180
FDTVSITLDAAPPGIPGNAAVIVLVDV LGIFANKG
Sbjct: 121 RAAAAAADRIRRLGAFDTVSITLDAAPPGIPGNAAVIVLVDVAEARGRAAGELGIFANKG 180
Query: 181 TRSCSVQGSVKLKNLFGYCETWDASGDLGLDQTVELSTGVAIPRIGAIPTPLVARISFLS 240
TRSCSVQGSVKLKNLFGYCETWDASGDLGLDQTVELSTGVAIPRIGAIPTPLVARISFLS
Sbjct: 181 TRSCSVQGSVKLKNLFGYCETWDASGDLGLDQTVELSTGVAIPRIGAIPTPLVARISFLS 240
Query: 241 EDWLKSSLREHMMGVSVGLLSTMNHNLAYNLSWRTITDRALMSSNSIRGQLGHSLLSSIK 300
EDWLKSSLREHMMGVSVGLLSTMNHNLAYNLSWRTITDRALMSSNSIRGQLGHSLLSSIK
Sbjct: 241 EDWLKSSLREHMMGVSVGLLSTMNHNLAYNLSWRTITDRALMSSNSIRGQLGHSLLSSIK 300
Query: 301 YAYKVDQRDSRIRPTRGYAYLFSSQVGGLAPESKDARYIRQELDLRXXXXXXXXXXXXXX 360
YAYKVDQRDSRIRPTRGYAYLFSSQVGGLAPESKDARYIRQELDLR
Sbjct: 301 YAYKVDQRDSRIRPTRGYAYLFSSQVGGLAPESKDARYIRQELDLRVALPLGVLNGALNA 360
Query: 361 XXXXXIIHPLARGSTGSISPLSEQFYLGGNRSLMCRLGGPSSLLGFKKRGLGTDLQSSTP 420
IIHPLARGSTGSISPLSEQFYLGGNRSLMCRLGGPSSLLGFKKRGLGTDLQSSTP
Sbjct: 361 GVAAGIIHPLARGSTGSISPLSEQFYLGGNRSLMCRLGGPSSLLGFKKRGLGTDLQSSTP 420
Query: 421 ENSENVASTSPELSARGGDIAVTAFADLSFDIPLKPLRELGIHGHAFVSAGNLAKLTEPD 480
ENSENVASTSPELSARGGDIAVTAFADLSFDIPLKPLRELGIHGHAFVSAGNLAKLTEPD
Sbjct: 421 ENSENVASTSPELSARGGDIAVTAFADLSFDIPLKPLRELGIHGHAFVSAGNLAKLTEPD 480
Query: 481 LRKFPLAEFLQTFRSSAGFGVVVPTRLFRIEVNYCHILKQFDYDLGKAGIQLNFSSP 537
LRKFPLAEFLQTFRSSAGFGVVVPTRLFRIEVNYCHILKQFDYDLGKAGIQLNFSSP
Sbjct: 481 LRKFPLAEFLQTFRSSAGFGVVVPTRLFRIEVNYCHILKQFDYDLGKAGIQLNFSSP 537
>Os12g0105700 Bacterial surface antigen (D15) family protein
Length = 521
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/470 (87%), Positives = 417/470 (88%)
Query: 68 ARLQSVLRRLTAEEVRIRVHDVEIRGCCRTRRAAVEAAVGSDLPXXXXXXXXXXXXXXXX 127
ARL+SVLRRLTAEEVRIRVHDVEIRGCCRTRRAAVEAAVGSDLP
Sbjct: 52 ARLESVLRRLTAEEVRIRVHDVEIRGCCRTRRAAVEAAVGSDLPRAATVRDLVRAAAAAA 111
Query: 128 XXXXXXXXFDTVSITLDAAPPGIPGNAAVIVLVDVXXXXXXXXXXLGIFANKGTRSCSVQ 187
FDTVSITLDAAPPGIPGNAAVIVLVDV LGIFANKGTRSCSVQ
Sbjct: 112 DRIRRLGAFDTVSITLDAAPPGIPGNAAVIVLVDVAEARGRAAGELGIFANKGTRSCSVQ 171
Query: 188 GSVKLKNLFGYCETWDASGDLGLDQTVELSTGVAIPRIGAIPTPLVARISFLSEDWLKSS 247
GSVKLKNLFGYCETWDASGDLGLDQTVELSTGVAIPRIGAIPTPLVARISFLSEDWLKSS
Sbjct: 172 GSVKLKNLFGYCETWDASGDLGLDQTVELSTGVAIPRIGAIPTPLVARISFLSEDWLKSS 231
Query: 248 LREHMMGVSVGLLSTMNHNLAYNLSWRTITDRALMSSNSIRGQLGHSLLSSIKYAYKVDQ 307
L+EHMMGVSVGLLSTMNHNLAYNLSWRTITDRALMSSNSIRGQLGHSLLSSIKYAYKVDQ
Sbjct: 232 LKEHMMGVSVGLLSTMNHNLAYNLSWRTITDRALMSSNSIRGQLGHSLLSSIKYAYKVDQ 291
Query: 308 RDSRIRPTRGYAYLFSSQVGGLAPESKDARYIRQELDLRXXXXXXXXXXXXXXXXXXXII 367
RDSRIRPTRGYAYLFSSQVGGLAPESKDARYIRQE+DLR II
Sbjct: 292 RDSRIRPTRGYAYLFSSQVGGLAPESKDARYIRQEIDLRVALPLGVLNGAVNAGVAAGII 351
Query: 368 HPLARGSTGSISPLSEQFYLGGNRSLMCRLGGPSSLLGFKKRGLGTDLQSSTPENSENVA 427
HPLARGSTGSISPLSEQFYLGGNRSLMCRLGGPSSLLGFKKRGLGTDL+SSTPENSENVA
Sbjct: 352 HPLARGSTGSISPLSEQFYLGGNRSLMCRLGGPSSLLGFKKRGLGTDLRSSTPENSENVA 411
Query: 428 STSPELSARGGDIAVTAFADLSFDIPLKPLRELGIHGHAFVSAGNLAKLTEPDLRKFPLA 487
STSPELSARGGDIAVTAFADLSFDIPLKPLRELGIHGHAFVSAGNLAKLTEPDLRKFPLA
Sbjct: 412 STSPELSARGGDIAVTAFADLSFDIPLKPLRELGIHGHAFVSAGNLAKLTEPDLRKFPLA 471
Query: 488 EFLQTFRSSAGFGVVVPTRLFRIEVNYCHILKQFDYDLGKAGIQLNFSSP 537
EFLQTFRSSAGFGVVVPTRLFRIEVNYCHILKQFDYDLGKAGIQLNFSSP
Sbjct: 472 EFLQTFRSSAGFGVVVPTRLFRIEVNYCHILKQFDYDLGKAGIQLNFSSP 521
>Os05g0470800 Bacterial surface antigen (D15) family protein
Length = 520
Score = 425 bits (1093), Expect = e-119, Method: Compositional matrix adjust.
Identities = 232/471 (49%), Positives = 315/471 (66%), Gaps = 5/471 (1%)
Query: 69 RLQSVLRRLTAEEVRIRVHDVEIRGCCRTRRAAVEAAVGSDLPXXXXXXXXXXXXXXXXX 128
++Q+V +RL+++ V IRVHDV I+G +T+ +EA V L
Sbjct: 52 KVQAVFKRLSSDPVGIRVHDVIIKGNAKTKEELIEAEVAELLRAAPTVQDLLRNASIASA 111
Query: 129 XXXXXXXFDTVSITLDAAPPGIPGNAAVIVLVDVXXXXXXXXXXLGIFANKGTRSCSVQG 188
FD+V+ITLDA PP +PG V+V V G+++ RS S++G
Sbjct: 112 RLRQLDVFDSVNITLDAGPPELPGTTNVVVEVVEAANPITGSA--GVYSKPEARSWSLEG 169
Query: 189 SVKLKNLFGYCETWDASGDLGLDQTVELSTGVAIPRIGAIPTPLVARISFLSEDWLK-SS 247
SVKLKNLFGY + WDASG DQT E+ GV++PR +I TPL+AR S S+DWLK SS
Sbjct: 170 SVKLKNLFGYGDIWDASGAYSWDQTSEVGIGVSLPRFKSISTPLMARASLSSQDWLKFSS 229
Query: 248 LREHMMGVSVGLLSTMNHNLAYNLSWRTITDRALMSSNSIRGQLGHSLLSSIKYAYKVDQ 307
+E ++G+S GL+STM H+L+YNL+WRT+TD + +SS SIR QLGH+LLS++KY YK+DQ
Sbjct: 230 YKERLLGLSFGLISTMQHDLSYNLTWRTLTDPSQVSSKSIRRQLGHNLLSALKYTYKIDQ 289
Query: 308 RDSRIRPTRGYAYLFSSQVGGLAPESKDARYIRQELDLRXXXXXXXXXXXXXXXXXXXII 367
R+S +RPT+GYA+L +SQVGGL +SK R+ RQE D+R I
Sbjct: 290 RNSHLRPTKGYAFLSTSQVGGLW-DSKGLRFFRQEFDVRGAVPLGFYNSALNVGLGVGAI 348
Query: 368 HPLARGSTGSISPLSEQFYLGGNRSLMCRLGGPSSLLGFKKRGLG-TDLQSSTPENSENV 426
PL RG S + ++FYLGG+ S +C L G SSLLGF+ RG+G T+ + P SE+
Sbjct: 349 LPLGRGFMNLSSSVPDRFYLGGHSSPVCSLSGLSSLLGFRTRGIGPTEPRRLVPSESEDG 408
Query: 427 ASTSPELSARGGDIAVTAFADLSFDIPLKPLRELGIHGHAFVSAGNLAKLTEPDLRKFPL 486
++ SP GGD+AV+AFADLSFD+PLK R+ GIHGHAF++AGNLAKL+E + +KF L
Sbjct: 409 SAASPGRDYLGGDLAVSAFADLSFDLPLKIFRDAGIHGHAFLTAGNLAKLSEGEYKKFSL 468
Query: 487 AEFLQTFRSSAGFGVVVPTRLFRIEVNYCHILKQFDYDLGKAGIQLNFSSP 537
+EF +TFRSSAG G+++PT+LFR+EVNYC+ILKQ ++D G+ GIQ +FSSP
Sbjct: 469 SEFGRTFRSSAGVGIILPTKLFRVEVNYCYILKQAEHDSGRTGIQFSFSSP 519
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,491,193
Number of extensions: 514584
Number of successful extensions: 1156
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1146
Number of HSP's successfully gapped: 3
Length of query: 537
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 431
Effective length of database: 11,501,117
Effective search space: 4956981427
Effective search space used: 4956981427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)