Os10g0572700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Four-helical cytokine family protein.
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Os10g0572700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Four-helical cytokine family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.26 | 0.227 | 12.9 | -0.891 | 0.249 | -0.771 | 0.213 | 1.01 | -0.158 | 4.33 | 23.41 | 15 | -- | -- |
| 23.77 | 0.229 | 12.9 | -1.04 | 0.266 | -0.691 | 0.0179 | -- | -0.206 | 4.27 | 23.41 | 15 | -- | -- |
| 23.36 | 0.225 | 12.9 | -0.911 | 0.25 | -0.768 | -- | 0.827 | -0.165 | 4.24 | 23.29 | 14 | -- | -- |
| 23.74 | 0.227 | 12.9 | -1.04 | 0.26 | -0.699 | -- | -- | -0.205 | 4.22 | 23.5 | 9 | -- | -- |
| 25.58 | 0.236 | 12.9 | -0.851 | -- | -0.996 | -- | 1.02 | -0.135 | -- | 23.63 | 29 | -- | -- |
| 31.23 | 0.262 | 12.9 | -1.16 | 0.529 | -- | 0.191 | -- | -0.301 | 3.52 | -- | -- | -- | -- |
| 31.34 | 0.262 | 12.9 | -1.17 | 0.53 | -- | -- | -- | -0.302 | 3.49 | -- | -- | -- | -- |
| 26.11 | 0.238 | 12.9 | -1.01 | -- | -0.921 | -- | -- | -0.184 | -- | 24.1 | 19 | -- | -- |
| 50.04 | 0.329 | 12.8 | -- | 0.157 | -1 | -- | -- | -0.0253 | 5.28 | 21.58 | 31 | -- | -- |
| 47.05 | 0.321 | 12.9 | -1.14 | -- | -- | -- | -- | -0.288 | -- | -- | -- | -- | -- |
| 67.2 | 0.383 | 12.9 | -- | 0.507 | -- | -- | -- | -0.172 | 3.5 | -- | -- | -- | -- |
| 50.67 | 0.332 | 12.8 | -- | -- | -1.08 | -- | -- | -0.0171 | -- | 21.65 | 92 | -- | -- |
| 81.58 | 0.422 | 12.9 | -- | -- | -- | -- | -- | -0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.44 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 8 | 22.92 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 16 | 23.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 30 | 23.43 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 16 |
| 36 | 23.44 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 46 | 23.51 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 52 | 23.53 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 63 | 23.60 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 79 | 23.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 110 | 23.71 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 125 | 23.74 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 247 | 24.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 255 | 24.05 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 265 | 24.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 269 | 24.12 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 281 | 24.16 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 301 | 24.20 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 11 |
| 336 | 24.27 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 373 | 24.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 428 | 24.40 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 21 |
| 615 | 24.63 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 21 |
| 621 | 24.64 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 13 |
| 647 | 24.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 651 | 24.67 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 788 | 24.80 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 19 |
| 807 | 24.83 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 19 |
| 830 | 24.85 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 12 |
| 872 | 24.89 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 16 |
| 994 | 24.99 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 8 |