BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0572700 Os10g0572700|Os10g0572700
(361 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G65940.1 | chr5:26376830-26379161 REVERSE LENGTH=379 212 3e-55
AT2G30660.1 | chr2:13058500-13061665 REVERSE LENGTH=379 207 7e-54
AT2G30650.1 | chr2:13053777-13056315 REVERSE LENGTH=379 202 3e-52
AT1G06550.1 | chr1:2003834-2006564 REVERSE LENGTH=388 146 2e-35
AT4G31810.1 | chr4:15387365-15390290 REVERSE LENGTH=410 135 4e-32
AT3G60510.3 | chr3:22357141-22360003 REVERSE LENGTH=427 127 1e-29
AT4G13360.1 | chr4:7775133-7777701 FORWARD LENGTH=422 73 2e-13
AT3G24360.1 | chr3:8839832-8842799 REVERSE LENGTH=419 69 5e-12
>AT5G65940.1 | chr5:26376830-26379161 REVERSE LENGTH=379
Length = 378
Score = 212 bits (539), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 95/158 (60%), Positives = 128/158 (81%)
Query: 180 EESLKKVDTSDPFAICGIIDQYSQQPSLKEKSALNRLEIINKCFSKRTVEEIIASLEQEA 239
E L +++++DP I+D Y+Q P LK++SA RL++I++CFS+RTVEEII++LE+EA
Sbjct: 199 EADLCRINSNDPTFASTILDAYTQHPRLKQQSAYRRLDVIDRCFSRRTVEEIISALEREA 258
Query: 240 PNVADEWVASAIQSLRKASPTSLKISLRSIREGRTQTVGECLRREYRMVCHVMRGDFSRD 299
AD W+++ IQ+L+K SP SLKISLRSIREGR Q VG+CL REYRMVCHVM+G+ S+D
Sbjct: 259 TQEADGWISATIQALKKGSPASLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGEISKD 318
Query: 300 FFEGCRAILLDKDRNPKWMPPRLEEVHDEVVEKYFSKV 337
F EGCRAIL+DKD+NPKW P RLE++ D +VE+YF +V
Sbjct: 319 FVEGCRAILVDKDKNPKWEPRRLEDMKDSMVEQYFERV 356
>AT2G30660.1 | chr2:13058500-13061665 REVERSE LENGTH=379
Length = 378
Score = 207 bits (527), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 94/155 (60%), Positives = 124/155 (80%)
Query: 180 EESLKKVDTSDPFAICGIIDQYSQQPSLKEKSALNRLEIINKCFSKRTVEEIIASLEQEA 239
E L KV +SDP + I+D Y+Q P LK+KSA +RL++I++CFSKRT+EEII++LE+E
Sbjct: 195 ETDLCKVGSSDPSFVSTILDAYTQHPHLKQKSAYHRLDVIDRCFSKRTMEEIISALERET 254
Query: 240 PNVADEWVASAIQSLRKASPTSLKISLRSIREGRTQTVGECLRREYRMVCHVMRGDFSRD 299
D+W + I++L+K+SP+SLKISLRSIREGR Q VG CL REYRMVCHVM+GD S+D
Sbjct: 255 TQELDDWSLTTIRALKKSSPSSLKISLRSIREGRLQGVGHCLTREYRMVCHVMKGDLSKD 314
Query: 300 FFEGCRAILLDKDRNPKWMPPRLEEVHDEVVEKYF 334
EGCRAIL+DKDRNPKW P RLE++ D +V+++F
Sbjct: 315 LVEGCRAILIDKDRNPKWEPRRLEDMKDSMVDQFF 349
>AT2G30650.1 | chr2:13053777-13056315 REVERSE LENGTH=379
Length = 378
Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 92/158 (58%), Positives = 123/158 (77%)
Query: 180 EESLKKVDTSDPFAICGIIDQYSQQPSLKEKSALNRLEIINKCFSKRTVEEIIASLEQEA 239
E L KV +S+ I I+D Y++ P L + S+ +RL++I++CFSKRTVEEI ++LE+E
Sbjct: 195 EAELYKVGSSNQTFISTILDAYAEYPHLNQHSSYHRLDVIDRCFSKRTVEEIFSALEREV 254
Query: 240 PNVADEWVASAIQSLRKASPTSLKISLRSIREGRTQTVGECLRREYRMVCHVMRGDFSRD 299
++W+ + IQ+L KASP+ LKISLRSIREGR Q VG+CL REYRMVCHVM+GD S+D
Sbjct: 255 TQKPNDWLLATIQALEKASPSCLKISLRSIREGRLQGVGQCLIREYRMVCHVMKGDISKD 314
Query: 300 FFEGCRAILLDKDRNPKWMPPRLEEVHDEVVEKYFSKV 337
F EGCRA+L+DKDRNPKW P RLE+V D +V++YF +V
Sbjct: 315 FVEGCRAVLIDKDRNPKWQPRRLEDVTDSMVDQYFERV 352
>AT1G06550.1 | chr1:2003834-2006564 REVERSE LENGTH=388
Length = 387
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 104/155 (67%)
Query: 180 EESLKKVDTSDPFAICGIIDQYSQQPSLKEKSALNRLEIINKCFSKRTVEEIIASLEQEA 239
E L +D+ D + I+++S++ +L + S LN+ +IN+CFSK +V++II + E EA
Sbjct: 199 EARLVSLDSGDADVVQSTIEEFSEKVNLDKDSILNKQSVINECFSKESVKQIIQAFEAEA 258
Query: 240 PNVADEWVASAIQSLRKASPTSLKISLRSIREGRTQTVGECLRREYRMVCHVMRGDFSRD 299
+EW+ I+ L+++SPT LKI L+SIREGR QT+ +CL++E+R+ +++R S D
Sbjct: 259 SKDGNEWITPVIKGLKRSSPTGLKIVLQSIREGRKQTLSDCLKKEFRLTLNILRKTISPD 318
Query: 300 FFEGCRAILLDKDRNPKWMPPRLEEVHDEVVEKYF 334
+EG RA+ +DKD +PKW P L+EV DE + F
Sbjct: 319 MYEGIRALTIDKDNSPKWNPATLDEVDDEKINSVF 353
>AT4G31810.1 | chr4:15387365-15390290 REVERSE LENGTH=410
Length = 409
Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/157 (46%), Positives = 102/157 (64%), Gaps = 2/157 (1%)
Query: 180 EESLKKVDTSDPFAICGIIDQYSQQPSLKEKSALNRLEIINKCFSKRTVEEIIASLEQEA 239
EE + K+ T DP I + QY S L+++E+I+K F TVEEII ++E EA
Sbjct: 231 EERIGKLLTDDPAVIEDSLAQYGDLVYPDSSSVLHKIELIDKYFGLDTVEEIIEAMENEA 290
Query: 240 PNVADEWVASAIQSLRKASPTSLKISLRSIREGRTQTVGECLRREYRM-VCHVMRGDFSR 298
N +EW ++ +++ASP SLKI+L+SIREGR QT+ +CL EYR+ +C V + S
Sbjct: 291 ANSCNEWCKKTLKQIKEASPLSLKITLQSIREGRFQTLDQCLTHEYRISICGVSK-VVSG 349
Query: 299 DFFEGCRAILLDKDRNPKWMPPRLEEVHDEVVEKYFS 335
DF EG RA L+DKD PKW PPRLE+V ++V+ YF+
Sbjct: 350 DFCEGIRARLVDKDFAPKWDPPRLEDVSKDMVDCYFT 386
>AT3G60510.3 | chr3:22357141-22360003 REVERSE LENGTH=427
Length = 426
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/180 (39%), Positives = 103/180 (57%), Gaps = 25/180 (13%)
Query: 180 EESLKKVDTSDPFAICGIIDQYSQQPSLKEKSALNRLEIINKCFSKRTVEEIIASL---- 235
EE LKK+ T DP + +++ ++ ++ + R++++ KCFS TVEEII SL
Sbjct: 227 EEQLKKLLTDDPSVVESCLEKCAEVAHPEKTGVIRRIDLLEKCFSHDTVEEIIDSLVSFF 286
Query: 236 ---------------------EQEAPNVADEWVASAIQSLRKASPTSLKISLRSIREGRT 274
E EA D W + ++ L+++SP SLK++LRSIREGR
Sbjct: 287 TNDSASMTISVTRSNSVLGHQEIEASRRKDTWCITTLRRLKESSPLSLKVALRSIREGRL 346
Query: 275 QTVGECLRREYRMVCHVMRGDFSRDFFEGCRAILLDKDRNPKWMPPRLEEVHDEVVEKYF 334
QT+ +CL REYRM + G S +F EG RA L+DKD PKW PP LE+V +++V+ YF
Sbjct: 347 QTLDQCLIREYRMSLQGLIGPMSGNFCEGVRARLIDKDEAPKWDPPSLEKVSEDMVDDYF 406
>AT4G13360.1 | chr4:7775133-7777701 FORWARD LENGTH=422
Length = 421
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 75/156 (48%), Gaps = 21/156 (13%)
Query: 194 ICGIIDQYSQQPSLKEKSALNRLEIINKCFS-----KRTVEEIIASLEQEAPNVADEWVA 248
I + +YS P E + L I FS K T+EE+ +Q + EW
Sbjct: 260 IQATLSKYSSNPE-SEAHLKSLLPHIESAFSSNKSIKETIEEL-KKYQQSTESSVVEWAN 317
Query: 249 SAIQSLRKASPTSLKIS---------LRSIREGRTQTVGECLRREYRMVC-HVMRGDFSR 298
A++ L K +P SL ++ +S E T+ ++ EYR+ +RGDF+
Sbjct: 318 EALKGLEKGAPFSLYLTQKYFSNVACAKSKPENELATLNGVMKTEYRIALRSALRGDFA- 376
Query: 299 DFFEGCRAILLDKDRNPKWMPPRLEEVHDEVVEKYF 334
EG RA+L+DKD+NPKW P +EEV + VE F
Sbjct: 377 ---EGVRAVLIDKDQNPKWNPTSIEEVDENEVEALF 409
>AT3G24360.1 | chr3:8839832-8842799 REVERSE LENGTH=419
Length = 418
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 71/155 (45%), Gaps = 19/155 (12%)
Query: 194 ICGIIDQYSQQPSLKEKSALNRLEIINKCFS-----KRTVEEIIASLEQEAPNVADEWVA 248
I + YS P E L I FS K T+EE+ +Q + EW
Sbjct: 257 IQATLSNYSSDPE-TESHLQMLLPQIESAFSVSKSVKETIEEL-KKFQQSSEASVAEWAN 314
Query: 249 SAIQSLRKASPTSLKISLRSIRE-----GRTQ----TVGECLRREYRMVCHVMRGDFSRD 299
A+Q + K +P SL ++ + + G+T T+ + EYR+ +R D
Sbjct: 315 EAVQGIEKGAPFSLYLTHKYFSKVACAKGKTNNAMATLNGVMITEYRIA---LRSALRSD 371
Query: 300 FFEGCRAILLDKDRNPKWMPPRLEEVHDEVVEKYF 334
F EG RA+L DKD+NPKW P L+EV + V+ F
Sbjct: 372 FTEGVRAVLTDKDQNPKWKPASLDEVDETEVDALF 406
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,866,018
Number of extensions: 134787
Number of successful extensions: 387
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 8
Length of query: 361
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 261
Effective length of database: 8,364,969
Effective search space: 2183256909
Effective search space used: 2183256909
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)