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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0563500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0238) R2 : 0.0222
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.161 (0.0501) R2dN8 : 0.0287 R2N8 : 0.0222
σ : 0.448
deviance : 92.18
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.28 0.435 3.18 0.0694 0.0731 0.862 -0.439 -1.36 0.176 4.21 1015 10 -- --
88.22 0.441 3.18 0.0476 0.0511 0.833 -0.526 -- 0.173 3.24 1015 10 -- --
87.53 0.439 3.17 0.076 0.102 0.896 -- -1.47 0.179 7.04 1014 362 -- --
88.32 0.438 3.17 0.0653 0.106 1.01 -- -- 0.176 6.95 1014 396 -- --
88.08 0.44 3.18 0.0781 -- 0.88 -- -1.47 0.181 -- 1014 356 -- --
90.94 0.447 3.18 0.0469 0.0728 -- -0.523 -- 0.163 3.35 -- -- -- --
91.59 0.448 3.18 0.0568 0.0979 -- -- -- 0.166 5.94 -- -- -- --
88.14 0.437 3.18 0.0962 -- 1.41 -- -- 0.181 -- 1016 549 -- --
88.43 0.438 3.18 -- 0.104 1.01 -- -- 0.17 7.03 1014 413 -- --
92.09 0.448 3.18 0.0597 -- -- -- -- 0.168 -- -- -- -- --
91.68 0.448 3.18 -- 0.0988 -- -- -- 0.159 5.91 -- -- -- --
88.38 0.438 3.18 -- -- 1.38 -- -- 0.17 -- 1016 547 -- --
92.18 0.448 3.18 -- -- -- -- -- 0.161 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 84.90 atmosphere 1015.0 10 < th dose independent rect. 3 23
3 85.73 atmosphere 1015.0 720 < th dose independent rect. 7 16
5 86.43 atmosphere 1005.0 270 > th dose dependent rect. 22 6
6 86.46 atmosphere 1015.0 720 < th dose independent rect. 14 9
8 86.63 atmosphere 1005.0 10 > th dose dependent rect. 23 8
9 86.64 atmosphere 1005.0 30 > th dose dependent rect. 2 1
12 86.65 temperature 20.0 30 > th dose independent rect. 2 1
14 86.66 humidity 80.0 30 > th dose independent rect. 2 1
15 86.66 temperature 20.0 30 > th dose dependent rect. 2 1
17 86.68 wind 1.0 14400 > th dose independent rect. 17 2
20 86.68 wind 1.0 1440 < th dose dependent rect. 8 12
22 86.70 wind 1.0 1440 < th dose independent rect. 8 12
23 86.70 wind 3.0 30 < th dose dependent rect. 2 1
25 86.70 wind 3.0 1440 < th dose dependent rect. 12 1
27 86.71 temperature 25.0 30 < th dose independent rect. 2 1
30 86.72 wind 5.0 30 < th dose independent rect. 2 1
33 86.72 temperature 10.0 30 > th dose independent rect. 2 1
36 86.72 humidity 50.0 30 > th dose independent rect. 2 1
39 86.72 atmosphere 995.0 30 > th dose independent rect. 2 1
41 86.72 atmosphere 1010.0 30 < th dose independent rect. 2 1
43 86.72 radiation 1.0 30 < th dose independent rect. 2 1
48 86.72 precipitation 0.1 30 < th dose independent rect. 2 1
49 86.72 temperature 10.0 30 > th dose independent rect. 3 23
50 86.72 humidity 50.0 30 > th dose dependent rect. 2 1
52 86.72 radiation 1.0 30 < th dose dependent rect. 2 1
57 86.72 precipitation 0.1 30 < th dose dependent rect. 2 1
63 86.74 humidity 80.0 1440 > th dose dependent rect. 5 7
67 86.78 wind 1.0 1440 < th dose dependent rect. 8 6
73 86.81 atmosphere 1015.0 30 < th dose dependent rect. 2 1
78 86.83 humidity 80.0 1440 > th dose independent rect. 11 1
80 86.85 humidity 80.0 1440 < th dose independent rect. 11 1
83 86.86 atmosphere 1015.0 10 < th dose independent sin 11 NA
89 86.86 atmosphere 1015.0 10 < th dose independent sin 23 NA
94 86.86 atmosphere 1015.0 30 < th dose independent rect. 11 23
108 86.90 temperature 30.0 30 < th dose dependent rect. 2 1
115 86.92 wind 1.0 1440 > th dose independent rect. 8 12
118 86.93 atmosphere 1005.0 270 > th dose dependent rect. 23 1
130 86.96 wind 1.0 1440 > th dose dependent rect. 12 1
136 86.98 precipitation 0.1 4320 > th dose independent rect. 5 4
142 86.99 precipitation 0.1 4320 < th dose independent rect. 5 4
144 86.99 atmosphere 1015.0 270 < th dose independent rect. 11 23
145 86.99 precipitation 0.1 4320 < th dose dependent rect. 5 4
149 87.00 wind 1.0 1440 < th dose independent rect. 8 6
151 87.00 precipitation 0.1 4320 > th dose dependent rect. 5 4
153 87.01 precipitation 0.1 4320 > th dose independent rect. 5 2
159 87.02 atmosphere 1015.0 720 < th dose independent rect. 16 7
174 87.04 humidity 80.0 1440 > th dose dependent rect. 8 1
184 87.05 precipitation 0.1 4320 > th dose dependent rect. 4 9
186 87.06 wind 1.0 30 > th dose independent rect. 2 1
187 87.06 precipitation 0.1 4320 > th dose dependent rect. 4 7
189 87.07 wind 1.0 1440 < th dose independent rect. 11 9
190 87.07 precipitation 0.1 4320 > th dose independent rect. 4 9
198 87.08 precipitation 0.1 4320 > th dose independent rect. 4 7
207 87.09 precipitation 0.1 4320 < th dose independent rect. 4 7
210 87.09 humidity 70.0 1440 > th dose dependent rect. 11 1
214 87.09 precipitation 0.1 4320 < th dose dependent rect. 4 7
257 87.14 wind 1.0 1440 < th dose dependent rect. 12 8
260 87.15 wind 9.0 1440 < th dose independent rect. 3 1
261 87.15 temperature 10.0 1440 > th dose independent rect. 3 1
264 87.15 temperature 30.0 1440 < th dose independent rect. 3 1
268 87.15 humidity 50.0 1440 > th dose independent rect. 3 1
277 87.15 atmosphere 995.0 1440 > th dose independent rect. 3 1
278 87.15 radiation 1.0 1440 < th dose independent rect. 3 1
300 87.15 wind 1.0 1440 > th dose independent rect. 12 8
302 87.15 temperature 10.0 1440 > th dose independent rect. 4 23
305 87.15 radiation 1.0 1440 < th dose dependent rect. 3 1
314 87.15 radiation 30.0 43200 < th dose dependent rect. 3 1
317 87.15 wind 3.0 14400 < th dose dependent rect. 16 3
364 87.21 humidity 90.0 1440 < th dose independent rect. 5 5
367 87.21 wind 9.0 1440 < th dose dependent rect. 9 6
371 87.22 wind 1.0 1440 > th dose independent rect. 8 6
378 87.22 atmosphere 1005.0 10 > th dose dependent rect. 20 11
381 87.23 atmosphere 1015.0 720 < th dose independent sin 20 NA
383 87.23 humidity 90.0 1440 < th dose independent rect. 6 3
386 87.23 wind 1.0 720 > th dose independent rect. 9 16
393 87.24 humidity 90.0 1440 < th dose independent rect. 5 8
404 87.25 radiation 1.0 4320 < th dose independent rect. 6 2
415 87.26 radiation 1.0 4320 > th dose independent rect. 6 2
426 87.28 atmosphere 1015.0 10 > th dose independent sin 7 NA
522 87.28 atmosphere 1015.0 10 > th dose independent no NA NA
527 87.28 atmosphere 1015.0 10 < th dose independent no NA NA
531 87.28 atmosphere 1015.0 270 > th dose independent rect. 20 1
537 87.28 atmosphere 1015.0 10 > th dose independent rect. 23 1
588 87.28 humidity 80.0 1440 > th dose independent rect. 8 4