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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0561200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to CigA protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.89 (0.0362) R2 : 0.208
β1 : -1.1 (0.136) R2dD : 0.126 R2D : 0.0413
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.6 (0.173) R2dE : 0.173 R2E : 0.0788
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.225 (0.0803) R2dN8 : 0.0202 R2N8 : -0.0276
σ : 0.67
deviance : 206.78
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 11.89
memory length : 476
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
201.99 0.668 3.89 -1.1 0.317 1.89 0.923 0.293 -0.249 3.72 14.61 334 -- --
201.97 0.662 3.89 -1.13 0.317 1.78 0.866 -- -0.262 3.77 16 338 -- --
204.12 0.665 3.89 -1.17 0.299 1.88 -- -0.0988 -0.272 4.96 9.978 396 -- --
204.04 0.665 3.89 -1.16 0.307 1.76 -- -- -0.267 4.53 16 375 -- --
206.77 0.67 3.89 -1.11 -- 1.61 -- -0.08 -0.228 -- 11.5 472 -- --
242.4 0.73 3.84 -0.741 0.256 -- 0.0548 -- 0.0085 18.9 -- -- -- --
242.4 0.729 3.84 -0.741 0.257 -- -- -- 0.00881 18.8 -- -- -- --
206.78 0.67 3.89 -1.1 -- 1.6 -- -- -0.225 -- 11.89 476 -- --
234.26 0.713 3.85 -- 0.147 1.12 -- -- -0.0743 4.16 18.9 396 -- --
245.85 0.733 3.84 -0.747 -- -- -- -- 0.00379 -- -- -- -- --
256.88 0.75 3.82 -- 0.266 -- -- -- 0.0914 18.6 -- -- -- --
235.04 0.714 3.85 -- -- 1.02 -- -- -0.0588 -- 18.9 458 -- --
260.57 0.753 3.82 -- -- -- -- -- 0.0867 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 202.15 temperature 15 270 > th dose dependent rect. 10 23
2 202.55 temperature 15 270 > th dose dependent no NA NA
4 202.61 temperature 15 270 > th dose dependent rect. 4 23
5 202.81 temperature 15 270 > th dose dependent rect. 21 23
6 202.87 temperature 15 30 > th dose dependent rect. 23 23
7 203.17 temperature 15 270 > th dose dependent rect. 12 23
27 204.61 temperature 15 270 > th dose dependent rect. 1 23
62 205.85 temperature 10 720 > th dose dependent rect. 23 19
74 206.08 temperature 25 1440 < th dose dependent rect. 17 16
75 206.09 temperature 25 1440 < th dose dependent rect. 17 14
79 206.13 temperature 15 1440 > th dose dependent rect. 22 9
86 206.16 temperature 30 1440 < th dose dependent rect. 22 10
87 206.16 temperature 25 1440 < th dose dependent rect. 21 12
103 206.22 temperature 25 1440 < th dose dependent sin 11 NA
236 206.56 temperature 10 1440 > th dose dependent rect. 3 1
247 206.58 temperature 10 1440 > th dose dependent rect. 3 4
296 206.67 temperature 30 1440 < th dose dependent rect. 3 4
316 206.71 temperature 15 1440 > th dose dependent rect. 23 3
329 206.74 temperature 25 1440 < th dose dependent rect. 3 1
401 206.87 temperature 15 1440 > th dose dependent sin 10 NA
436 206.93 temperature 25 1440 < th dose dependent rect. 22 1
451 206.95 temperature 15 720 > th dose dependent rect. 15 23
463 207.00 temperature 30 1440 < th dose dependent rect. 1 1
596 207.27 temperature 30 270 < th dose dependent rect. 10 23
638 207.39 temperature 30 270 < th dose dependent rect. 12 23
722 207.57 temperature 25 1440 < th dose dependent rect. 8 23
728 207.58 temperature 25 1440 < th dose dependent rect. 20 23
729 207.59 temperature 25 1440 < th dose dependent no NA NA
742 207.63 temperature 15 270 > th dose dependent sin 19 NA
753 207.65 temperature 10 720 > th dose dependent rect. 1 17
790 207.73 temperature 25 1440 < th dose dependent rect. 1 23
791 207.73 temperature 25 1440 < th dose dependent rect. 3 23
842 207.89 temperature 20 4320 > th dose independent rect. 20 4
859 207.91 temperature 30 270 < th dose dependent rect. 6 23
879 207.97 temperature 30 270 < th dose dependent no NA NA
918 208.06 temperature 30 270 < th dose dependent rect. 3 23
995 208.24 temperature 15 10 > th dose dependent sin 17 NA