BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0561200 Os10g0561200|AK066634
         (521 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os10g0561200  Similar to CigA protein                             912   0.0  

>Os10g0561200 Similar to CigA protein
          Length = 521

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/521 (88%), Positives = 459/521 (88%)

Query: 1   ALLTDPIRFAGVGGGGGEMDLPASRGRWRKRSARSHXXXXXXXXXXXXXXXXXXXXXXXX 60
           ALLTDPIRFAGVGGGGGEMDLPASRGRWRKRSARSH                        
Sbjct: 1   ALLTDPIRFAGVGGGGGEMDLPASRGRWRKRSARSHAPLLVAVLVLLIPASLLLSSAYSS 60

Query: 61  XXXXXXPFSXXXXXXXXXXXXXXXSPELEGERFLWYAPHSGFSNQVGEXXXXXXXXXXXX 120
                 PFS               SPELEGERFLWYAPHSGFSNQVGE            
Sbjct: 61  LLRSILPFSGFGGGGGGGGRRCGRSPELEGERFLWYAPHSGFSNQVGELRNAAVAAALLN 120

Query: 121 XXXXXPPVLDHHAVVLGSCPKFRVADASDLRAAVWDHSMQLLRERRYVSMGDIIDLSPIK 180
                PPVLDHHAVVLGSCPKFRVADASDLRAAVWDHSMQLLRERRYVSMGDIIDLSPIK
Sbjct: 121 RTLVVPPVLDHHAVVLGSCPKFRVADASDLRAAVWDHSMQLLRERRYVSMGDIIDLSPIK 180

Query: 181 ATVRTIDFRVFVSLWCGVDMRKTCFSGLCCAVSGGGSLPGDYDRCRSMLSGLGGSENGCV 240
           ATVRTIDFRVFVSLWCGVDMRKTCFSGLCCAVSGGGSLPGDYDRCRSMLSGLGGSENGCV
Sbjct: 181 ATVRTIDFRVFVSLWCGVDMRKTCFSGLCCAVSGGGSLPGDYDRCRSMLSGLGGSENGCV 240

Query: 241 YPVQDDCRTTVWTYQENNDGALDSFQPDEDLKKRKKISYVRRRKDMYKALGPGSEAEDAS 300
           YPVQDDCRTTVWTYQENNDGALDSFQPDEDLKKRKKISYVRRRKDMYKALGPGSEAEDAS
Sbjct: 241 YPVQDDCRTTVWTYQENNDGALDSFQPDEDLKKRKKISYVRRRKDMYKALGPGSEAEDAS 300

Query: 301 LLAFGTLFSGPYKGSESYFDIHESPKDRRLQTILEKVEFLPFAPEIIATGKEFARKKIKE 360
           LLAFGTLFSGPYKGSESYFDIHESPKDRRLQTILEKVEFLPFAPEIIATGKEFARKKIKE
Sbjct: 301 LLAFGTLFSGPYKGSESYFDIHESPKDRRLQTILEKVEFLPFAPEIIATGKEFARKKIKE 360

Query: 361 PFLCAQLRLLDGQFKNHWKATFSALKEKLKAVALEMKKTQGSGPIHMFMMTDLPPANWSK 420
           PFLCAQLRLLDGQFKNHWKATFSALKEKLKAVALEMKKTQGSGPIHMFMMTDLPPANWSK
Sbjct: 361 PFLCAQLRLLDGQFKNHWKATFSALKEKLKAVALEMKKTQGSGPIHMFMMTDLPPANWSK 420

Query: 421 TYLADIAKDGRYKLHTLKESDELVAQTAERLMAAEHGVRSGFIPKNIANTRKDCDPVQLP 480
           TYLADIAKDGRYKLHTLKESDELVAQTAERLMAAEHGVRSGFIPKNIANTRKDCDPVQLP
Sbjct: 421 TYLADIAKDGRYKLHTLKESDELVAQTAERLMAAEHGVRSGFIPKNIANTRKDCDPVQLP 480

Query: 481 EILLYVEESVCSCASLGFVGTAGSTIAGSIETMRKNNVCQL 521
           EILLYVEESVCSCASLGFVGTAGSTIAGSIETMRKNNVCQL
Sbjct: 481 EILLYVEESVCSCASLGFVGTAGSTIAGSIETMRKNNVCQL 521



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,007,313
Number of extensions: 700347
Number of successful extensions: 2155
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2152
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 416
Effective length of database: 11,553,331
Effective search space: 4806185696
Effective search space used: 4806185696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)