BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0561200 Os10g0561200|AK066634
         (521 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17430.1  | chr4:9725201-9726801 REVERSE LENGTH=508            451   e-127

>AT4G17430.1 | chr4:9725201-9726801 REVERSE LENGTH=508
          Length = 507

 Score =  451 bits (1159), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/439 (52%), Positives = 305/439 (69%), Gaps = 19/439 (4%)

Query: 88  LEGERFLWYAPHSGFSNQVGEXXXXXXXXXXXXXXXXXPPVLDHHAVVLGSCPKFRVADA 147
           L G++FLWYAPHSGFSNQ+ E                 PP+LDHHAV LGSCPKFRV   
Sbjct: 78  LLGQKFLWYAPHSGFSNQLSEFKNALLMAGILNRTLIIPPILDHHAVALGSCPKFRVLSP 137

Query: 148 SDLRAAVWDHSMQLLRERRYVSMGDIIDLSPI--KATVRTIDFRVFVSLWCGVDMRKTCF 205
           S++R +VW+HS++LL+  RYVSM DI+D+S +   + VR IDFR F SL CGVD+   C 
Sbjct: 138 SEIRISVWNHSIELLKTDRYVSMADIVDISSLVSSSAVRVIDFRYFASLQCGVDLETLCT 197

Query: 206 SGLCCAVSGGGSLPGDYDRCRSMLSGLGGSENGCVYPVQDDCRTTVWTYQENN-DGALDS 264
             L        SL     +C  +LSG+ G+ + C+Y V +DCRTTVWTY+    DG LDS
Sbjct: 198 DDLAEQSQAYESLK----QCGYLLSGVRGNVDKCLYAVDEDCRTTVWTYKNGEADGRLDS 253

Query: 265 FQPDEDLKKRKKISYVRRRKDMYKALGPGSEAEDASLLAFGTLFSGPYKGSESYFDIHES 324
           FQPDE LKK+KK+S VRRR+D+YK LG G+EAE A++LAFG+LF+ PYKGSE Y DIH+S
Sbjct: 254 FQPDEKLKKKKKLSNVRRRRDVYKTLGHGTEAESAAILAFGSLFTAPYKGSELYIDIHKS 313

Query: 325 PKDRRLQTILEKVEFLPFAPEIIATGKEFARKKIKEPFLCAQLRLLDGQFKNHWKATFSA 384
           PK   +++++EKV+FLPF  EI+  GK+FA + IK PFLCAQLRLLDGQFKNH ++TF+ 
Sbjct: 314 PK---IKSLVEKVDFLPFVREIMIAGKKFASETIKAPFLCAQLRLLDGQFKNHRESTFTG 370

Query: 385 LKEKLKAVALEMKKTQGSGPIHMFMMTDLPPANWSKTYLADIAKDG-RYKLHTLKESDEL 443
           L +KL+A+++     +  G I++F+MTDLP  NW+ TYL D++K+   +KLH + E DE 
Sbjct: 371 LYQKLEALSV-----KNPGLINVFVMTDLPEFNWTGTYLGDLSKNSTNFKLHFIGEQDEF 425

Query: 444 VAQTAERLMAAEHGVRSGFIPKNIANTRK---DCDPVQLPEILLYVEESVCSCASLGFVG 500
           +A+T   L +A HG + G IP ++ + +K    C P     + LY+EE+VCSCASLGFVG
Sbjct: 426 LARTEHELDSASHGQKFGSIPMSLDSIKKMQTHCYPHGGSNVQLYIEEAVCSCASLGFVG 485

Query: 501 TAGSTIAGSIETMRKNNVC 519
           T GSTIA S+E MRK N C
Sbjct: 486 TPGSTIADSVEMMRKYNAC 504



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,532,179
Number of extensions: 429324
Number of successful extensions: 1041
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1033
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 418
Effective length of database: 8,282,721
Effective search space: 3462177378
Effective search space used: 3462177378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)