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Os10g0560400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to CONSTANS-like protein CO9 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0436) R2 : 0.947
β1 : -1.28 (0.161) R2dD : 0.00832 R2D : 0.00781
β2 : 6.68 (0.13) R2dC : 0.426 R2C : 0.716
β3 : -6.02 (0.174) R2dE : 0.197 R2E : 0.506
β4 : 4.43 (0.472) R2dD*C : 0.0107 R2D*C : 0.0113
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.54 (0.094) R2dN8 : 0.00522 R2N8 : 0.00439
σ : 0.814
deviance : 305.36
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_____
C
peak time of C : 8.08
E
wheather : temperature
threshold : 17.27
memory length : 242
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.3
open length of G : 6.88

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
305.36 0.821 10.8 -1.26 6.59 -6 4.95 1.36 -0.539 8.04 16.94 257 18.1 6.83
305.36 0.814 10.8 -1.28 6.68 -6.02 4.43 -- -0.54 8.08 17.27 242 18.3 6.88
359.37 0.883 10.9 -1.31 6.29 -6.39 -- -2.69 -0.636 8.02 16.71 266 17.9 6.83
365.66 0.891 10.8 -1.19 6.55 -6.17 -- -- -0.526 8.07 17.42 257 18.2 6.65
1200.93 1.61 11.1 -0.72 -- -8.52 -- -3.22 -0.262 -- 8.877 189 17.2 8.03
780.97 1.31 10.9 -1.79 9.13 -- 5.04 -- -1.01 9.08 -- -- -- --
869.66 1.38 10.9 -1.61 9.11 -- -- -- -1 9.09 -- -- -- --
1118.29 1.56 11.3 -0.337 -- -10.1 -- -- -0.258 -- 8.858 204 16.7 8.3
402.34 0.934 10.8 -- 6.55 -6.22 -- -- -0.423 8.12 17.72 254 18.2 6.61
5659.58 3.52 11.1 -1.63 -- -- -- -- -0.952 -- -- -- -- --
938.26 1.43 10.8 -- 9.11 -- -- -- -0.824 9.1 -- -- -- --
703.04 1.23 11 -- -- -10.7 -- -- -0.604 -- -11.95 518 13.3 8.02
5729.98 3.53 11.1 -- -- -- -- -- -0.77 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 321.62 temperature 15.0 270 > th dose dependent rect. 18 7
20 384.90 temperature 20.0 10 > th dose dependent rect. 20 7
36 404.86 temperature 20.0 90 > th dose independent rect. 19 7
74 438.97 temperature 20.0 10 > th dose independent rect. 20 6
140 476.18 temperature 10.0 270 > th dose dependent rect. 18 16
180 492.87 temperature 20.0 90 > th dose independent rect. 7 18
270 527.17 temperature 20.0 10 > th dose independent rect. 20 16
336 542.88 temperature 15.0 10 > th dose dependent rect. 20 16
340 543.59 temperature 25.0 270 > th dose dependent rect. 19 13
342 543.78 atmosphere 1010.0 90 < th dose independent rect. 19 6
409 555.11 temperature 25.0 270 > th dose independent rect. 18 14
452 560.92 temperature 30.0 270 < th dose dependent rect. 22 7
485 565.39 atmosphere 1015.0 270 < th dose independent rect. 6 17
511 568.24 temperature 25.0 270 < th dose independent rect. 15 14
519 569.37 wind 1.0 270 > th dose independent rect. 18 5
525 570.39 atmosphere 1015.0 270 < th dose independent rect. 18 16
539 571.58 precipitation 0.1 90 < th dose independent rect. 1 18
540 571.58 precipitation 0.1 90 < th dose dependent rect. 1 18
545 572.31 temperature 20.0 10 > th dose independent rect. 19 22
561 573.71 precipitation 0.1 90 < th dose independent rect. 3 16
562 573.71 precipitation 0.1 90 < th dose dependent rect. 3 16
583 576.25 precipitation 0.1 270 < th dose independent rect. 1 16
584 576.25 precipitation 0.1 270 < th dose dependent rect. 1 16
591 576.72 precipitation 0.1 270 < th dose independent rect. 10 8
592 576.72 precipitation 0.1 270 < th dose dependent rect. 10 8
602 578.07 radiation 10.0 270 < th dose independent rect. 17 8
604 578.55 wind 1.0 270 > th dose independent rect. 17 8
642 581.93 temperature 30.0 270 < th dose dependent rect. 14 15
643 582.04 temperature 25.0 270 < th dose independent rect. 20 9
644 582.19 wind 9.0 270 < th dose independent rect. 17 8
651 582.66 temperature 10.0 270 > th dose independent rect. 10 8
652 582.66 atmosphere 1015.0 270 < th dose independent rect. 10 8
653 582.66 temperature 10.0 270 > th dose independent rect. 18 16
656 582.78 wind 9.0 270 < th dose independent rect. 18 16
657 582.83 humidity 50.0 270 > th dose independent rect. 18 16
665 583.15 radiation 40.0 270 < th dose dependent rect. 17 8
673 583.27 temperature 10.0 270 > th dose independent rect. 1 16
674 583.27 atmosphere 1015.0 270 < th dose independent rect. 1 16
683 583.99 radiation 1.0 90 < th dose dependent rect. 19 6
685 584.00 temperature 30.0 90 < th dose independent rect. 19 6
686 584.00 humidity 50.0 90 > th dose independent rect. 19 6
688 584.00 atmosphere 995.0 90 > th dose independent rect. 19 6
689 584.00 radiation 1.0 90 < th dose independent rect. 19 6
694 584.00 temperature 10.0 90 > th dose independent rect. 1 18
695 584.00 atmosphere 1015.0 90 < th dose independent rect. 1 18
704 584.20 humidity 50.0 270 > th dose independent rect. 17 8
706 584.30 wind 9.0 90 < th dose independent rect. 19 6
712 584.61 atmosphere 995.0 270 > th dose independent rect. 18 16
714 584.69 precipitation 0.1 270 < th dose independent rect. 17 8
715 584.69 precipitation 0.1 270 < th dose dependent rect. 17 8
716 584.70 precipitation 0.1 270 < th dose independent rect. 18 16
717 584.70 precipitation 0.1 270 < th dose dependent rect. 18 16
726 584.92 radiation 1.0 90 < th dose dependent rect. 19 8
729 584.93 humidity 50.0 90 > th dose independent rect. 19 8
731 584.93 atmosphere 995.0 90 > th dose independent rect. 19 8
732 584.93 radiation 1.0 90 < th dose independent rect. 19 8
737 584.93 temperature 10.0 90 > th dose independent rect. 3 16
738 584.93 atmosphere 1015.0 90 < th dose independent rect. 3 16
748 585.33 wind 9.0 90 < th dose independent rect. 19 8
775 586.48 precipitation 0.1 90 < th dose independent rect. 19 6
776 586.48 precipitation 0.1 90 < th dose dependent rect. 19 6
785 587.18 precipitation 0.1 270 < th dose independent rect. 23 7
786 587.18 precipitation 0.1 270 < th dose dependent rect. 23 7
787 587.24 precipitation 0.1 270 < th dose independent rect. 23 19
788 587.24 precipitation 0.1 270 < th dose dependent rect. 23 19
789 587.31 wind 9.0 270 < th dose independent rect. 6 17
802 588.02 wind 1.0 270 > th dose independent rect. 6 17
809 588.41 wind 9.0 270 < th dose independent rect. 1 16
813 588.55 precipitation 0.1 90 < th dose independent rect. 19 8
814 588.55 precipitation 0.1 90 < th dose dependent rect. 19 8
816 588.60 wind 9.0 90 < th dose independent rect. 1 18
819 588.75 wind 7.0 270 < th dose independent rect. 23 7
824 589.20 atmosphere 995.0 270 > th dose independent rect. 17 8
833 589.47 radiation 10.0 270 < th dose independent rect. 23 7
839 589.90 wind 9.0 270 < th dose independent rect. 10 8
848 590.36 temperature 10.0 270 > th dose independent rect. 23 7
850 590.36 humidity 50.0 270 > th dose independent rect. 23 7
853 590.36 atmosphere 995.0 270 > th dose independent rect. 23 7
857 590.36 wind 9.0 90 < th dose independent rect. 3 16
859 590.41 wind 9.0 270 < th dose independent rect. 5 8
860 590.48 radiation 40.0 270 < th dose dependent rect. 23 7
867 590.93 wind 1.0 270 > th dose independent rect. 10 8
880 591.42 atmosphere 1015.0 270 < th dose independent rect. 5 20
885 591.53 temperature 10.0 270 > th dose independent rect. 5 8
886 591.53 atmosphere 995.0 270 > th dose independent rect. 5 8
887 591.53 atmosphere 1015.0 270 < th dose independent rect. 5 8
888 591.53 temperature 10.0 270 > th dose independent rect. 13 16
895 591.77 precipitation 0.1 270 < th dose independent rect. 5 8
897 591.77 precipitation 0.1 270 < th dose dependent rect. 5 8
928 592.35 precipitation 0.1 270 < th dose independent rect. 13 16
929 592.35 precipitation 0.1 270 < th dose dependent rect. 13 16
993 594.33 temperature 10.0 270 > th dose independent rect. 23 19
995 594.39 temperature 10.0 90 > th dose dependent rect. 7 18